RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1005695" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1005695 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21830398 21830398 PRJNA1005695_P_NODE_37158_length_248_cov_0.891429_g36306_i0 PRJNA1005695 37158 248 0.891429 2.21074392 Heterolobosea sp. 1892890 Heterolobosea other_Eukaryota 252 2.06e-62   NTclustered gi|1059971677|gb|KT892699.1| 1892890 g36306 i0 88.372 8.4758064516129 215 17 86 4 1 214 1029 822 Heterolobosea sp. strain LPG3 18S ribosomal RNA gene, partial sequence blastn 2102 252 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp.
24379667 24379667 PRJNA1005695_P_NODE_39120_length_244_cov_0.912281_g38268_i0 PRJNA1005695 39120 244 0.912281 2.22596564 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 63.9 1.02e-5   NTclustered gi|290976222|ref|XM_002670794.1| 5762 g38268 i0 90.196 0.586065573770492 51 2 43 3 136 185 388 340 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_56359), mRNA blastn 143 63.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;