RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1005695" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1005695 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2703758 2703758 PRJNA1005695_P_NODE_30963_length_268_cov_2.000000_g30111_i0 PRJNA1005695 30963 268 2 5.36 Lytechinus pictus 7653 Echinodermata other_Eukaryota 52.8 0.025   NTclustered gi|2707414840|ref|XM_064099171.1| 7653 g30111 i0 100 0.626865671641791 28 0 10 0 6 33 1485 1458 PREDICTED: Lytechinus pictus uncharacterized LOC129261136 (LOC129261136), transcript variant X2, mRNA blastn 168 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
15456244 15456244 PRJNA1005695_P_NODE_37293_length_247_cov_2.689655_g36441_i0 PRJNA1005695 37293 247 2.689655 6.64344785 Anneissia japonica 1529436 Echinodermata other_Eukaryota 60.2 1.33e-4   NTclustered gi|1826642534|ref|XM_033253480.1| 1529436 g36441 i0 89.362 0.57085020242915 47 5 19 0 200 246 2040 1994 PREDICTED: Anneissia japonica serine/threonine-protein kinase DCLK1-like (LOC117110710), transcript variant X2, mRNA blastn 141 60.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
19279133 19279133 PRJNA1005695_P_NODE_33776_length_256_cov_1.612022_g32924_i0 PRJNA1005695 33776 256 1.612022 4.12677632 Acanthaster planci 133434 Echinodermata other_Eukaryota 54.7 0.006   NTclustered gi|1229180385|ref|XM_022248042.1| 133434 g32924 i0 100 0.2265625 29 0 11 0 211 239 9159 9187 PREDICTED: Acanthaster planci ubiquitin carboxyl-terminal hydrolase 32-like (LOC110986285), transcript variant X2, mRNA blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;