RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1005695" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1005695 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
153543 153543 PRJNA1005695_P_NODE_28861_length_278_cov_1.629268_g28009_i0 PRJNA1005695 28861 278 1.629268 4.52936504 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 453 5.999999999999999e-123   NTclustered gi|300078498|gb|GU001160.1| 5755 g28009 i0 96.39 22.0143884892086 277 6 99 2 2 278 5462 5734 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6120 453 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5256583 5256583 PRJNA1005695_P_NODE_5325_length_687_cov_41.035831_g4516_i0 PRJNA1005695 5325 687 41.035831 281.91615897 Vannella croatica 1778588 Discosea other_Eukaryota 1221 0   NTclustered gi|973761167|gb|KT345693.1| 1778588 g4516 i0 98.834 82.4425036390102 686 6 99 2 2 686 523 1207 Vannella croatica isolate KRKA 29.9.7.6.1 small subunit ribosomal RNA gene, partial sequence blastn 56638 1221 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella croatica
8654222 8654222 PRJNA1005695_P_NODE_22567_length_316_cov_1.683128_g21715_i0 PRJNA1005695 22567 316 1.683128 5.31868448 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 228 4.579999999999999e-55   NTclustered gi|1914009752|gb|MT975626.1| 1017091 g21715 i0 79.874 91.0284810126582 318 58 99 3 5 316 449 132 Cochliopodium larifeili cytochrome C oxidase subunit 1 gene, partial cds; mitochondrial blastn 28765 228 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
14182272 14182272 PRJNA1005695_P_NODE_35172_length_252_cov_0.871508_g34320_i0 PRJNA1005695 35172 252 0.871508 2.19620016 Paravannella minima 1443144 Discosea other_Eukaryota 466 6.89e-127   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g34320 i0 100 101.071428571429 252 0 100 0 1 252 2699 2448 Paravannella minima mitochondrion, complete genome blastn 25470 466 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
20127586 20127586 PRJNA1005695_P_NODE_3256_length_887_cov_2.630221_g2631_i0 PRJNA1005695 3256 887 2.630221 23.33006027 Acanthamoeba 5754 Discosea other_Eukaryota 394 1.2899999999999997e-104   NTclustered gi|881634|gb|U29610.1|ACU29610 5755 g2631 i0 77.075 17.5896279594138 711 145 79 16 1 702 610 1311 Acanthaoeba castellanii actin-related protein 3 Arp3 mRNA, complete cds blastn 15602 394 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;