RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1005695" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1005695 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8654212 8654212 PRJNA1005695_P_NODE_21147_length_327_cov_2.586614_g20295_i0 PRJNA1005695 21147 327 2.586614 8.45822778 Helicoprorodontidae 1607782 SAR_Eukaryotes SAR_Eukaryotes 137 8.25e-28   NTclustered gi|375305434|gb|JF975394.1| 652932 g20295 i0 90.385 37.5474006116208 104 10 32 0 131 234 309 206 Trachelotractus entzi isolate LWW07033111 28S ribosomal RNA gene, partial sequence blastn 12278 137 1 Eukaryota Sar   Ciliophora Litostomatea Haptorida   Trachelotractus Trachelotractus entzi
14182129 14182129 PRJNA1005695_P_NODE_19232_length_344_cov_2.490775_g18380_i0 PRJNA1005695 19232 344 2.490775 8.568266 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.033   NTclustered gi|471220273|ref|XM_004025160.1| 5932 g18380 i0 100 0.0813953488372093 28 0 8 0 181 208 263 236 Ichthyophthirius multifiliis ubiquitin- hect domain protein, putative (IMG5_189580) mRNA, complete cds blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
20127558 20127558 PRJNA1005695_P_NODE_26636_length_290_cov_1.433180_g25784_i0 PRJNA1005695 26636 290 1.43318 4.156222 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 472 1.74e-128   NTclustered gi|10782|emb|X54004.1| 5908 g25784 i0 96.194 58.4689655172414 289 9 99 2 2 289 2968 3255 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 16956 472 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;