RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1005695" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1005695 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4829157 4829157 PRJNA1005695_P_NODE_35544_length_251_cov_0.876404_g34692_i0 PRJNA1005695 35544 251 0.876404 2.19977404 Armatimonadota 67819 Bacteria Bacteria 217 7.619999999999999e-52   NTclustered gi|1996217993|dbj|AP021858.1| 2608984 g34692 i0 84.956 44.4820717131474 226 21 87 11 1 219 36034 35815 Candidatus Nitrosymbiomonas proteolyticus DNA, complete genome blastn 11165 217 1 Bacteria   Bacillati Armatimonadota       Candidatus Nitrosymbiomonas Candidatus Nitrosymbiomonas proteolyticus
12907148 12907148 PRJNA1005695_P_NODE_18271_length_354_cov_0.907473_g17419_i0 PRJNA1005695 18271 354 0.907473 3.21245442 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 326 1.79e-84   NTclustered gi|2874253701|emb|OY969427.1| 157466 g17419 i0 83.761 191.333333333333 351 50 98 6 1 347 3408735 3408388 MAG: uncultured Armatimonadetes bacterium isolate MFD09671.bin.1.19 genome assembly, chromosome: 1 blastn 67732 326 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
18005140 18005140 PRJNA1005695_P_NODE_13915_length_410_cov_0.741840_g13063_i0 PRJNA1005695 13915 410 0.74184 3.041544 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 472 2.5499999999999997e-128   NTclustered gi|2076449834|gb|CP075365.1| 2682144 g13063 i0 87.591 237.50487804878 411 45 99 6 1 409 1878937 1878531 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM2 chromosome blastn 97377 472 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;