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contig_metadata

30 rows where analysis = "blastn", bioproject = "PRJNA1005695" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 30 ✖

bioproject 1

  • PRJNA1005695 · 30 ✖

analysis 1

  • blastn · 30 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2703670 2703670 PRJNA1005695_P_NODE_21523_length_324_cov_2.414343_g20671_i0 PRJNA1005695 21523 324 2.414343 7.82247132 Desmochloris halophila 138176 Plants Plants 327 4.52e-85   NTclustered gi|371782123|emb|HE610155.1| 138176 g20671 i0 90.079 99.4351851851852 252 25 78 0 72 323 3608 3357 Desmochloris halophila plastid 16S rRNA gene (partial), 23S rRNA gene (partial) and ITS1, strain UTEX 2073 blastn 32217 327 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
3551705 3551705 PRJNA1005695_P_NODE_29363_length_275_cov_7.420792_g28511_i0 PRJNA1005695 29363 275 7.420792 20.407178 Trebouxia 13786 Plants Plants 484 2.1e-132   NTclustered gi|162134340|gb|EU123979.1| 160068 g28511 i0 98.54 127.774545454545 274 4 99 0 2 275 1488 1215 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast blastn 35138 484 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
5256340 5256340 PRJNA1005695_P_NODE_15925_length_380_cov_2.436482_g15073_i0 PRJNA1005695 15925 380 2.436482 9.2586316 Neochloris aquatica 3099 Plants Plants 702 0   NTclustered gi|1008861455|ref|NC_029670.1| 3099 g15073 i0 100 160.692105263158 380 0 100 0 1 380 80922 80543 Neochloris aquatica strain UTEX 138 chloroplast, complete genome blastn 61063 702 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Neochloridaceae Neochloris Neochloris aquatica
5256465 5256465 PRJNA1005695_P_NODE_30565_length_270_cov_1.543147_g29713_i0 PRJNA1005695 30565 270 1.543147 4.1664969 Trebouxia sp. SL0000003 3350044 Plants Plants 427 3.5199999999999993e-115   NTclustered gi|2917930141|emb|OZ234926.1| 3350044 g29713 i0 95.185 1.85185185185185 270 13 100 0 1 270 95253 94984 Trebouxia sp. SL0000003 genome assembly, organelle: mitochondrion blastn 500 427 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
6531731 6531731 PRJNA1005695_P_NODE_32806_length_260_cov_1.668449_g31954_i0 PRJNA1005695 32806 260 1.668449 4.3379674 Trebouxia sp. SL0000003 3350044 Plants Plants 407 4.39e-109   NTclustered gi|2917930141|emb|OZ234926.1| 3350044 g31954 i0 95.312 15.5653846153846 256 12 98 0 3 258 118727 118982 Trebouxia sp. SL0000003 genome assembly, organelle: mitochondrion blastn 4047 407 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
10356580 10356580 PRJNA1005695_P_NODE_16929_length_367_cov_3.517007_g16077_i0 PRJNA1005695 16929 367 3.517007 12.90741569 Trebouxia lynnae 1825957 Plants Plants 634 2.72e-177   NTclustered gi|1812100161|ref|NC_045839.1| 1825957 g16077 i0 97.82 122.596730245232 367 8 100 0 1 367 178579 178945 Trebouxia sp. TR9 chloroplast, partial genome blastn 44993 634 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
10356826 10356826 PRJNA1005695_P_NODE_709_length_1791_cov_8.120489_g478_i0 PRJNA1005695 709 1791 8.120489 145.43795799 Pseudochloris wilhelmii 1418016 Plants Plants 2122 0   NTclustered gi|723457419|ref|NC_025547.1| 1418016 g478 i0 99.402 85.6577331099944 1170 7 99 0 622 1791 76570 75401 Pseudochloris wilhelmii culture-collection SAG:1.80 chloroplast, complete genome blastn 153413 2122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochloris Pseudochloris wilhelmii
11204475 11204475 PRJNA1005695_P_NODE_36809_length_248_cov_2.674286_g35957_i0 PRJNA1005695 36809 248 2.674286 6.63222928 root 1 Root_unresolved Root_unresolved 453 5.2600000000000005e-123   NTclustered gi|2507491536|dbj|LC749599.1| 51714 g35957 i0 99.597 102.145161290323 248 1 100 0 1 248 112015 111768 Volvox africanus NIES-4468 DNA, SD-like region blastn 25332 453 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
11632067 11632067 PRJNA1005695_P_NODE_25550_length_296_cov_6.883408_g24698_i0 PRJNA1005695 25550 296 6.883408 20.37488768 Capsosiphon fulvescens 205396 Plants Plants 230 1.1799999999999998e-55   NTclustered gi|1514830526|gb|MH790907.1| 205396 g24698 i0 84.298 105.320945945946 242 31 81 6 56 295 3581 3345 Capsosiphon fulvescens clone 5+6_typeB chloroplast sequence blastn 31175 230 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Ulotrichaceae Capsosiphon Capsosiphon fulvescens
11632208 11632208 PRJNA1005695_P_NODE_37710_length_246_cov_5.260116_g36858_i0 PRJNA1005695 37710 246 5.260116 12.93988536 Fusochloris perforata 106203 Plants Plants 141 4.61e-29   NTclustered gi|723456653|ref|NC_025543.1| 106203 g36858 i0 83.333 12.6951219512195 156 23 63 2 34 188 2718 2565 Fusochloris perforata culture-collection SAG:28.85 chloroplast, complete genome blastn 3123 141 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Microthamniales Microthamniaceae Fusochloris Fusochloris perforata
12479851 12479851 PRJNA1005695_P_NODE_10050_length_490_cov_2.841727_g9199_i0 PRJNA1005695 10050 490 2.841727 13.9244623 Ulva 3118 Plants Plants 523 8.429999999999998e-144   NTclustered gi|2095862465|gb|MN853879.1| 3117 g9199 i0 86.032 122.763265306122 494 61 100 8 1 490 35416 35905 Ulva prolifera chloroplast, complete genome blastn 60154 523 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva prolifera
12907326 12907326 PRJNA1005695_P_NODE_37191_length_248_cov_0.891429_g36339_i0 PRJNA1005695 37191 248 0.891429 2.21074392 Trebouxia sp. SL0000003 3350044 Plants Plants 383 7.0000000000000005e-102   NTclustered gi|2917929620|emb|OZ234908.1| 3350044 g36339 i0 94.715 0.991935483870968 246 13 99 0 1 246 3523208 3523453 Trebouxia sp. SL0000003 genome assembly, chromosome: 3 blastn 246 383 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
13754497 13754497 PRJNA1005695_P_NODE_25511_length_297_cov_1.383929_g24659_i0 PRJNA1005695 25511 297 1.383929 4.11026913 Eukaryota 2759 Plants Plants 58.4 5.93e-4   NTclustered gi|2082270471|ref|XM_043072392.1| 3055 g24659 i0 100 10.2828282828283 31 0 10 0 75 105 2441 2411 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_17g728950v5), mRNA blastn 3054 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
14182126 14182126 PRJNA1005695_P_NODE_18812_length_348_cov_1.829091_g17960_i0 PRJNA1005695 18812 348 1.829091 6.36523668 Trebouxia sp. SL0000003 3350044 Plants Plants 577 4.3999999999999996e-160   NTclustered gi|2917930141|emb|OZ234926.1| 3350044 g17960 i0 96.552 76.5 348 12 100 0 1 348 115103 114756 Trebouxia sp. SL0000003 genome assembly, organelle: mitochondrion blastn 26622 577 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
15028900 15028900 PRJNA1005695_P_NODE_30752_length_269_cov_1.591837_g29900_i0 PRJNA1005695 30752 269 1.591837 4.28204153 Trebouxia 13786 Plants Plants 497 2.63e-136   NTclustered gi|94448830|emb|AJ969653.1| 285713 g29900 i0 100 100 269 0 100 0 1 269 155 423 Uncultured Trebouxia photobiont chloroplast partial rbcL gene for ribulose bisphosphate carboxylase large subunit, isolate L-121-Idd blastn 26900 497 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
16730309 16730309 PRJNA1005695_P_NODE_13134_length_424_cov_1.333333_g12282_i0 PRJNA1005695 13134 424 1.333333 5.65333192 Ulva compressa 63659 Plants Plants 553 9.189999999999999e-153   NTclustered gi|2043344315|gb|MW344287.1| 63659 g12282 i0 90.799 102.10141509434 413 38 97 0 9 421 53211 52799 Ulva compressa isolate Uco2 plastid, complete genome blastn 43291 553 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva compressa
16730485 16730485 PRJNA1005695_P_NODE_35834_length_250_cov_2.446328_g34982_i0 PRJNA1005695 35834 250 2.446328 6.11582 Trebouxia sp. SL0000003 3350044 Plants Plants 388 1.5199999999999998e-103   NTclustered gi|2917929628|emb|OZ234916.1| 3350044 g34982 i0 94.8 34.144 250 11 99 2 1 249 730431 730183 Trebouxia sp. SL0000003 genome assembly, chromosome: 11 blastn 8536 388 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
18005176 18005176 PRJNA1005695_P_NODE_18955_length_347_cov_1.445255_g18103_i0 PRJNA1005695 18955 347 1.445255 5.01503485 Cladophora sp. CHR505640 511815 Plants Plants 460 4.609999999999999e-125   NTclustered gi|170672768|gb|EU380586.1| 511815 g18103 i0 92.049 50.850144092219 327 26 94 0 21 347 569 243 Cladophora sp. CHR505640 P700 chlorophyll a-apoprotein A2 (psaB) gene, partial cds; plastid blastn 17645 460 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Cladophoraceae Cladophora Cladophora sp. CHR505640
19278966 19278966 PRJNA1005695_P_NODE_1156_length_1452_cov_7.700508_g478_i1 PRJNA1005695 1156 1452 7.700508 111.81137616 Trebouxia aggregata 160068 Plants Plants 2497 0   NTclustered gi|162134340|gb|EU123979.1| 160068 g478 i1 97.934 68.9951790633609 1452 11 100 7 1 1452 1714 3146 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast blastn 100181 2497 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
19279085 19279085 PRJNA1005695_P_NODE_27316_length_286_cov_1.464789_g26464_i0 PRJNA1005695 27316 286 1.464789 4.18929654 Trebouxia sp. SL0000003 3350044 Plants Plants 180 1.16e-40   NTclustered gi|2917930139|emb|OZ234925.1| 3350044 g26464 i0 94.783 1 115 6 99 0 56 170 1841975 1842089 Trebouxia sp. SL0000003 genome assembly, chromosome: 20 blastn 286 180 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
19279150 19279150 PRJNA1005695_P_NODE_35816_length_250_cov_2.638418_g34964_i0 PRJNA1005695 35816 250 2.638418 6.596045 Trebouxia lynnae 1825957 Plants Plants 442 1.1499999999999994e-119   NTclustered gi|1016111943|gb|KU716051.1| 1825957 g34964 i0 98.79 7.04 248 3 99 0 2 249 6962 6715 Trebouxia lynnae 26S-18S intergenic spacer region, partial sequence; 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence; and 26S-18S rRNA intergenic spacer region, partial sequence blastn 1760 442 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
20554562 20554562 PRJNA1005695_P_NODE_10677_length_475_cov_1.930348_g9825_i0 PRJNA1005695 10677 475 1.930348 9.169153 Pseudochloris wilhelmii 1418016 Plants Plants 878 0   NTclustered gi|723457419|ref|NC_025547.1| 1418016 g9825 i0 100 121.172631578947 475 0 100 0 1 475 77872 77398 Pseudochloris wilhelmii culture-collection SAG:1.80 chloroplast, complete genome blastn 57557 878 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochloris Pseudochloris wilhelmii
20554670 20554670 PRJNA1005695_P_NODE_24057_length_306_cov_2.609442_g23205_i0 PRJNA1005695 24057 306 2.609442 7.98489252 Jenufa minuta 993092 Plants Plants 560 3.84e-155   NTclustered gi|959124355|ref|NC_028582.1| 993092 g23205 i0 99.673 77.7745098039216 306 1 100 0 1 306 104598 104903 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 23799 560 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
20554782 20554782 PRJNA1005695_P_NODE_36237_length_250_cov_0.881356_g35385_i0 PRJNA1005695 36237 250 0.881356 2.20339 Volvox africanus 51714 Plants Plants 52.8 0.023   NTclustered gi|1996223730|dbj|LC586641.1| 51714 g35385 i0 100 0.112 28 0 11 0 157 184 124289 124262 Volvox africanus NIES-3780 genes for SD-like region, sequence_id: longSDRlike, male, complete sequence blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
21830311 21830311 PRJNA1005695_P_NODE_28198_length_281_cov_3.134615_g27346_i0 PRJNA1005695 28198 281 3.134615 8.80826815 Trebouxia sp. SL0000003 3350044 Plants Plants 414 2.87e-111   NTclustered gi|2917929622|emb|OZ234910.1| 3350044 g27346 i0 93.238 2.34163701067616 281 19 100 0 1 281 961929 962209 Trebouxia sp. SL0000003 genome assembly, chromosome: 5 blastn 658 414 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
21830413 21830413 PRJNA1005695_P_NODE_38698_length_245_cov_0.906977_g37846_i0 PRJNA1005695 38698 245 0.906977 2.22209365 Trebouxia sp. SL0000003 3350044 Plants Plants 292 1.2e-74   NTclustered gi|2917929618|emb|OZ234906.1| 3350044 g37846 i0 91.163 0.877551020408163 215 19 88 0 2 216 1896813 1896599 Trebouxia sp. SL0000003 genome assembly, chromosome: 1 blastn 215 292 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
21830419 21830419 PRJNA1005695_P_NODE_39018_length_244_cov_0.912281_g38166_i0 PRJNA1005695 39018 244 0.912281 2.22596564 Trebouxia sp. SL0000003 3350044 Plants Plants 180 9.68e-41   NTclustered gi|2917929623|emb|OZ234911.1| 3350044 g38166 i0 97.17 0.848360655737705 106 3 84 0 124 229 1991693 1991798 Trebouxia sp. SL0000003 genome assembly, chromosome: 6 blastn 207 180 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
23105928 23105928 PRJNA1005695_P_NODE_7659_length_566_cov_5.906694_g6826_i0 PRJNA1005695 7659 566 5.906694 33.43188804 Trebouxia sp. AM-2018 2109662 Plants Plants 1018 0   NTclustered gi|2294290708|gb|MW619787.1| 2109662 g6826 i0 99.117 100 566 5 100 0 1 566 33 598 Trebouxia sp. AM-2018 isolate S.villosa Castagneto 2 photosystem II protein D1 (psbA) gene, partial cds; chloroplast blastn 56600 1018 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. AM-2018
24379592 24379592 PRJNA1005695_P_NODE_31860_length_264_cov_1.869110_g31008_i0 PRJNA1005695 31860 264 1.86911 4.9344504 Neochloris aquatica 3099 Plants Plants 488 1.5499999999999999e-133   NTclustered gi|1008861455|ref|NC_029670.1| 3099 g31008 i0 100 172.443181818182 264 0 100 0 1 264 79608 79871 Neochloris aquatica strain UTEX 138 chloroplast, complete genome blastn 45525 488 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Neochloridaceae Neochloris Neochloris aquatica
25227298 25227298 PRJNA1005695_P_NODE_23920_length_307_cov_2.401709_g23068_i0 PRJNA1005695 23920 307 2.401709 7.37324663 Ulvophyceae 33103 Plants Plants 392 1.49e-104   NTclustered gi|1197510977|ref|NC_034710.1| 44573 g23068 i0 90.301 100.192182410423 299 29 97 0 3 301 75232 75530 Pseudoneochloris marina culture UTEX:1445 chloroplast, complete genome blastn 30759 392 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Sykidiales Sykidiacaeae Sykidion Sykidion marinum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;