RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1005695" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1005695 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10356575 10356575 PRJNA1005695_P_NODE_16369_length_374_cov_3.900332_g15517_i0 PRJNA1005695 16369 374 3.900332 14.58724168 Candidatus Saccharibacteria genomosp. TM7-H1 2080739 Bacteria Bacteria 545 1.34e-150   NTclustered gi|1566427536|gb|CP026537.1| 2080739 g15517 i0 93.496 117.066844919786 369 21 99 3 1 369 543545 543910 Candidatus Saccharibacteria genomosp. TM7-H1 isolate E1 chromosome blastn 43783 545 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria genomosp. TM7-H1
10356766 10356766 PRJNA1005695_P_NODE_38589_length_245_cov_0.906977_g37737_i0 PRJNA1005695 38589 245 0.906977 2.22209365 Candidatus Babeliales bacterium 2803731 Bacteria Bacteria 363 8.989999999999999e-96   NTclustered gi|2874253985|emb|OY970310.1| 2803731 g37737 i0 94.492 7.0734693877551 236 12 96 1 10 245 336998 336764 MAG: Candidatus Babeliales bacterium isolate MFD05512.bin.c.16 genome assembly, chromosome: 1 blastn 1733 363 1 Bacteria Bacteria candidate phyla     Candidatus Babeliae Candidatus Babeliales     Candidatus Babeliales bacterium
20554829 20554829 PRJNA1005695_P_NODE_39797_length_242_cov_2.106509_g38945_i0 PRJNA1005695 39797 242 2.106509 5.09775178 uncultured Candidatus Binatia bacterium 3036252 Bacteria Bacteria 206 1.58e-48   NTclustered gi|2546137839|emb|OY282432.1| 3036252 g38945 i0 82.645 211.954545454545 242 32 98 7 1 237 2262802 2262566 MAG: uncultured Candidatus Binatia bacterium isolate 81991fb1-66cf-4eb3-b653-309a223604dd genome assembly, chromosome: 1 blastn 51293 206 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       uncultured Candidatus Binatia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;