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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA1005695" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 14 ✖

bioproject 1

  • PRJNA1005695 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
153543 153543 PRJNA1005695_P_NODE_28861_length_278_cov_1.629268_g28009_i0 PRJNA1005695 28861 278 1.629268 4.52936504 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 453 5.999999999999999e-123   NTclustered gi|300078498|gb|GU001160.1| 5755 g28009 i0 96.39 22.0143884892086 277 6 99 2 2 278 5462 5734 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6120 453 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
153676 153676 PRJNA1005695_P_NODE_4821_length_725_cov_32.984663_g4050_i0 PRJNA1005695 4821 725 32.984663 239.13880675 Endolimax piscium 1284676 Evosea other_Eukaryota 990 0   NTclustered gi|443299290|gb|JX101955.1| 1284676 g4050 i0 91.153 28.2537931034483 746 42 99 23 1 724 744 1 Endolimax piscium clone PM2 18S ribosomal RNA gene, partial sequence blastn 20484 990 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Endolimax Endolimax piscium
1428232 1428232 PRJNA1005695_P_NODE_24362_length_304_cov_1.705628_g23510_i0 PRJNA1005695 24362 304 1.705628 5.18510912 Arcella hemisphaerica 497998 Tubulinea other_Eukaryota 254 7.24e-63   NTclustered gi|304308758|gb|HM853710.1| 497998 g23510 i0 82.237 57.3519736842105 304 44 98 10 4 302 351 53 Arcella hemisphaerica strain blue&red clone act23 actin gene, partial cds blastn 17435 254 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella hemisphaerica
2703590 2703590 PRJNA1005695_P_NODE_11243_length_462_cov_66.709512_g10391_i0 PRJNA1005695 11243 462 66.709512 308.19794544 Amoeba proteus 5775 Tubulinea other_Eukaryota 191 9.11e-44   NTclustered gi|173717|gb|M19222.1|AMPRRM 5775 g10391 i0 81.78 35.95670995671 236 36 50 6 106 338 417 186 A.proteus 28S large subunit rRNA, 5' end blastn 16612 191 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
5256379 5256379 PRJNA1005695_P_NODE_20325_length_334_cov_9.160920_g19473_i0 PRJNA1005695 20325 334 9.16092 30.5974728 Amoeba leningradensis 160820 Tubulinea other_Eukaryota 294 4.74e-75   NTclustered gi|17897590|emb|AJ314605.1| 160820 g19473 i0 88.259 3.01796407185629 247 28 74 1 86 331 812 1058 Amoeba leningradensis partial 16S rRNA gene, strain CCAP 1503/6 blastn 1008 294 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba leningradensis
5256583 5256583 PRJNA1005695_P_NODE_5325_length_687_cov_41.035831_g4516_i0 PRJNA1005695 5325 687 41.035831 281.91615897 Vannella croatica 1778588 Discosea other_Eukaryota 1221 0   NTclustered gi|973761167|gb|KT345693.1| 1778588 g4516 i0 98.834 82.4425036390102 686 6 99 2 2 686 523 1207 Vannella croatica isolate KRKA 29.9.7.6.1 small subunit ribosomal RNA gene, partial sequence blastn 56638 1221 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella croatica
7806214 7806214 PRJNA1005695_P_NODE_42447_length_206_cov_4.654135_g41595_i0 PRJNA1005695 42447 206 4.654135 9.5875181 Didymium iridis 5793 Evosea other_Eukaryota 215 2.17e-51   NTclustered gi|2687|emb|X60210.1| 5793 g41595 i0 87.568 10.2184466019417 185 23 90 0 21 205 1946 1762 D.iridis LSU rRNA gene blastn 2105 215 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
8654222 8654222 PRJNA1005695_P_NODE_22567_length_316_cov_1.683128_g21715_i0 PRJNA1005695 22567 316 1.683128 5.31868448 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 228 4.579999999999999e-55   NTclustered gi|1914009752|gb|MT975626.1| 1017091 g21715 i0 79.874 91.0284810126582 318 58 99 3 5 316 449 132 Cochliopodium larifeili cytochrome C oxidase subunit 1 gene, partial cds; mitochondrial blastn 28765 228 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
9081049 9081049 PRJNA1005695_P_NODE_33148_length_259_cov_1.059140_g32296_i0 PRJNA1005695 33148 259 1.05914 2.7431726 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 243 1.3e-59   NTclustered gi|345452598|gb|JF694317.1| 1078852 g32296 i0 86.425 83.4864864864865 221 30 85 0 37 257 633 413 Pyxidicula operculata clone 2 actin gene, partial cds blastn 21623 243 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata
12907180 12907180 PRJNA1005695_P_NODE_21891_length_321_cov_2.262097_g21039_i0 PRJNA1005695 21891 321 2.262097 7.26133137 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 497 3.22e-136   NTclustered gi|365928255|gb|JN825705.1| 590481 g21039 i0 99.632 69.1121495327103 272 1 85 0 50 321 748 1019 Uncultured Amoebozoa clone Alchichica_AQ2b_5E_39 small subunit ribosomal RNA gene, partial sequence blastn 22185 497 1 Eukaryota Amoebozoa             uncultured Amoebozoa
14182272 14182272 PRJNA1005695_P_NODE_35172_length_252_cov_0.871508_g34320_i0 PRJNA1005695 35172 252 0.871508 2.19620016 Paravannella minima 1443144 Discosea other_Eukaryota 466 6.89e-127   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g34320 i0 100 101.071428571429 252 0 100 0 1 252 2699 2448 Paravannella minima mitochondrion, complete genome blastn 25470 466 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
18005415 18005415 PRJNA1005695_P_NODE_5915_length_650_cov_3.140381_g5091_i0 PRJNA1005695 5915 650 3.140381 20.4124765 Mastigamoeba balamuthi 108607 Evosea other_Eukaryota 335 5.729999999999999e-87   NTclustered gi|23452830|gb|AF543583.1| 108607 g5091 i0 76.352 26.5784615384615 647 139 98 9 1 640 2728 2089 Mastigamoeba balamuthi putative pyruvate phosphate dikinase (ppdk) gene, complete cds blastn 17276 335 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi
20127586 20127586 PRJNA1005695_P_NODE_3256_length_887_cov_2.630221_g2631_i0 PRJNA1005695 3256 887 2.630221 23.33006027 Acanthamoeba 5754 Discosea other_Eukaryota 394 1.2899999999999997e-104   NTclustered gi|881634|gb|U29610.1|ACU29610 5755 g2631 i0 77.075 17.5896279594138 711 145 79 16 1 702 610 1311 Acanthaoeba castellanii actin-related protein 3 Arp3 mRNA, complete cds blastn 15602 394 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23105742 23105742 PRJNA1005695_P_NODE_2539_length_999_cov_25.580994_g1982_i0 PRJNA1005695 2539 999 25.580994 255.55413006 Endolimax piscium 1284676 Evosea other_Eukaryota 1090 0   NTclustered gi|443299289|gb|JX101954.1| 1284676 g1982 i0 86.5 26.2572572572573 1037 87 99 35 1 996 925 1949 Endolimax piscium clone PM1 18S ribosomal RNA gene, partial sequence blastn 26231 1090 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Endolimax Endolimax piscium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;