RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1004255" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1004255 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7805802 7805802 PRJNA1004255_S_NODE_17947_length_153_cov_289.827273_g17739_i0 PRJNA1004255 17947 153 289.827273 443.43572769 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 255 8.900000000000001e-64   NTclustered gi|56757963|gb|AY815390.1| 6182 g17739 i0 96.774 127 155 2 100 2 1 153 1894 1741 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 19431 257 0.992217898832685 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
12906990 12906990 PRJNA1004255_S_NODE_9951_length_201_cov_9.993671_g9743_i0 PRJNA1004255 9951 201 9.993671 20.08727871 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 58.4 3.76e-4   NTclustered gi|56757963|gb|AY815390.1| 6182 g9743 i0 100 2.30348258706468 31 0 15 0 171 201 427 457 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 463 58.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
19278830 19278830 PRJNA1004255_S_NODE_4716_length_268_cov_4.728889_g4508_i0 PRJNA1004255 4716 268 4.728889 12.67342252 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 496 9.429999999999999e-136   NTclustered gi|1124902734|gb|AY812498.2| 6182 g4508 i0 100 99.9962686567164 268 0 100 0 1 268 914 1181 Schistosoma japonicum SJCHGC01615 protein mRNA, partial cds blastn 26799 496 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;