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contig_metadata

24 rows where analysis = "blastn", bioproject = "PRJNA1004255" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1004255 · 24 ✖

analysis 1

  • blastn · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1427961 1427961 PRJNA1004255_S_NODE_11062_length_192_cov_4.583893_g10854_i0 PRJNA1004255 11062 192 4.583893 8.80107456 Trebouxia gigantea 103878 Plants Plants 339 1.13e-88   NTclustered gi|922575246|gb|JQ921008.1| 103878 g10854 i0 98.438 98.578125 192 3 100 0 1 192 979 788 Trebouxia gigantea strain UTEX 2231 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 18927 339 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia gigantea
3551549 3551549 PRJNA1004255_S_NODE_15663_length_164_cov_3.495868_g15455_i0 PRJNA1004255 15663 164 3.495868 5.73322352 Chlorophyta 3041 Plants Plants 298 1.59e-76   NTclustered gi|655359727|gb|KJ616757.1| 3076 g15455 i0 99.394 100.609756097561 165 0 100 1 1 164 1430 1594 Chlorella sorokiniana strain LB75 18S ribosomal RNA gene, partial sequence blastn 16500 298 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
3551575 3551575 PRJNA1004255_S_NODE_6543_length_238_cov_6.764103_g6335_i0 PRJNA1004255 6543 238 6.764103 16.09856514 Trebouxia 13786 Plants Plants 379 8.629999999999999e-101   NTclustered gi|171479768|gb|EU352794.1| 53267 g6335 i0 95.745 99.2016806722689 235 10 99 0 2 236 691 457 Trebouxia jamesii strain UTEX 2233 large subunit ribosomal RNA (rrnL) gene, partial sequence; and unknown genes; chloroplast blastn 23610 381 0.994750656167979 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia jamesii
3979653 3979653 PRJNA1004255_S_NODE_2464_length_333_cov_6.565517_g2256_i0 PRJNA1004255 2464 333 6.565517 21.86317161 Chlamydomonas reinhardtii 3055 Plants Plants 195 4.93e-45   NTclustered gi|2082247514|ref|XM_001696143.2| 3055 g2256 i0 87.356 59.7747747747748 174 16 52 3 160 333 458 291 Chlamydomonas reinhardtii ribosomal protein S27a (CHLRE_06g273600v5), mRNA blastn 19905 195 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
6531457 6531457 PRJNA1004255_S_NODE_8306_length_217_cov_5.701149_g8098_i0 PRJNA1004255 8306 217 5.701149 12.37149333 Blidingia sp. DT1 2022611 Plants Plants 224 3.84e-54   NTclustered gi|1220117795|gb|KY401415.1| 2022611 g8098 i0 85.388 40.705069124424 219 28 100 4 1 217 222 6 Blidingia sp. DT1 28S ribosomal RNA gene, partial sequence blastn 8833 224 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Blidingia Blidingia sp. DT1
8654086 8654086 PRJNA1004255_S_NODE_15267_length_166_cov_3.235772_g15059_i0 PRJNA1004255 15267 166 3.235772 5.37138152 Trebouxiophyceae 75966 Plants Plants 222 1e-53   NTclustered gi|1027590348|gb|KT778121.1| 3077 g15059 i0 100 75.1686746987952 120 0 100 0 1 120 1038 1157 Chlorella vulgaris isolate SM5_2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12478 222 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
9928963 9928963 PRJNA1004255_S_NODE_17668_length_155_cov_1.678571_g17460_i0 PRJNA1004255 17668 155 1.678571 2.60178505 Trebouxiophyceae 75966 Plants Plants 287 3.21e-73   NTclustered gi|115430294|emb|AM260463.1| 3082 g17460 i0 100 99.4258064516129 155 0 100 0 1 155 591 745 'Chlorella' saccharophila partial 26S rRNA gene, strain SAG 211-1a blastn 15411 287 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium saccharophilum
11204292 11204292 PRJNA1004255_S_NODE_6689_length_236_cov_5.569948_g6481_i0 PRJNA1004255 6689 236 5.569948 13.14507728 Ulva 3118 Plants Plants 217 7.09e-52   NTclustered gi|2889538672|gb|PQ824971.1| 63410 g6481 i0 83.983 94.8008474576271 231 31 96 4 11 236 82418 82647 Ulva lactuca isolate NCweed-2197 chloroplast, complete genome blastn 22373 219 0.990867579908676 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva lactuca
11631818 11631818 PRJNA1004255_S_NODE_3770_length_289_cov_6.500000_g3562_i0 PRJNA1004255 3770 289 6.5 18.785 Jaagichlorella roystonensis 1052852 Plants Plants 446 1.05e-120   NTclustered gi|1819291170|ref|NC_046060.1| 1052852 g3562 i0 98.047 93.6574394463668 256 5 100 0 34 289 77781 78036 Jaagichlorella roystonensis mitochondrion, complete genome blastn 27067 446 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Jaagichlorella Jaagichlorella roystonensis
11631867 11631867 PRJNA1004255_S_NODE_9870_length_202_cov_4.062893_g9662_i0 PRJNA1004255 9870 202 4.062893 8.20704386 Trebouxia aggregata 160068 Plants Plants 281 2.0600000000000002e-71   NTclustered gi|162134340|gb|EU123979.1| 160068 g9662 i0 94.972 10.6930693069307 179 9 89 0 1 179 1376 1198 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast blastn 2160 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
13754386 13754386 PRJNA1004255_S_NODE_18351_length_152_cov_2.834862_g18143_i0 PRJNA1004255 18351 152 2.834862 4.30899024 Chlorellaceae 35461 Plants Plants 259 6.82e-65   NTclustered gi|1768906865|gb|MN128434.1| 3078 g18143 i0 97.368 92.3881578947368 152 4 100 0 1 152 50267 50116 Auxenochlorella pyrenoidosa isolate FACHB-5 chloroplast, complete genome blastn 14043 259 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
14181907 14181907 PRJNA1004255_S_NODE_11692_length_187_cov_8.368056_g11484_i0 PRJNA1004255 11692 187 8.368056 15.64826472 Auxenochlorella pyrenoidosa 3078 Plants Plants 324 3.07e-84   NTclustered gi|1768906865|gb|MN128434.1| 3078 g11484 i0 99.438 117.294117647059 178 1 95 0 1 178 49237 49060 Auxenochlorella pyrenoidosa isolate FACHB-5 chloroplast, complete genome blastn 21934 324 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
14181914 14181914 PRJNA1004255_S_NODE_13432_length_176_cov_5.060150_g13224_i0 PRJNA1004255 13432 176 5.06015 8.905864 Trebouxia sp. clade A, OTU A38 2600612 Plants Plants 63.9 6.86e-6   NTclustered gi|1719911595|gb|MK684806.1| 2600612 g13224 i0 95 1.90909090909091 40 2 23 0 128 167 131 92 Trebouxia sp. clade A, OTU A38 voucher UR00107 PsbL gene, partial cds; and psbL-psbJ intergenic spacer, partial sequence; chloroplast blastn 336 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. clade A, OTU A38
15455860 15455860 PRJNA1004255_S_NODE_1133_length_430_cov_3.361757_g925_i0 PRJNA1004255 1133 430 3.361757 14.4555551 Trebouxia sp. SL0000003 3350044 Plants Plants 320 1.0299999999999999e-82   NTclustered gi|2917930141|emb|OZ234926.1| 3350044 g925 i0 85.538 107.316279069767 325 26 75 7 1 324 110256 110560 Trebouxia sp. SL0000003 genome assembly, organelle: mitochondrion blastn 46146 320 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
16303504 16303504 PRJNA1004255_S_NODE_7073_length_231_cov_4.750000_g6865_i0 PRJNA1004255 7073 231 4.75 10.9725 Ulvales 3113 Plants Plants 320 5.12e-83   NTclustered gi|2017997555|ref|NC_053612.1| 83795 g6865 i0 91.845 121.008658008658 233 14 99 5 2 231 51887 52117 Ulva fenestrata strain U64 chloroplast, complete genome blastn 27953 322 0.993788819875776 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva fenestrata
16730206 16730206 PRJNA1004255_S_NODE_8214_length_218_cov_6.200000_g8006_i0 PRJNA1004255 8214 218 6.2 13.516 Chloroidium ellipsoideum 63676 Plants Plants 394 2.78e-105   NTclustered gi|1169296931|gb|KY364701.1| 63676 g8006 i0 99.091 102.678899082569 220 0 100 2 1 218 4568 4349 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 22384 394 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
18004981 18004981 PRJNA1004255_S_NODE_17455_length_156_cov_1.663717_g17247_i0 PRJNA1004255 17455 156 1.663717 2.59539852 Chloroidium ellipsoideum 63676 Plants Plants 217 4.309999999999999e-52   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g17247 i0 91.667 87.8717948717949 156 13 100 0 1 156 116 271 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 13708 217 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
18852695 18852695 PRJNA1004255_S_NODE_9655_length_204_cov_4.658385_g9447_i0 PRJNA1004255 9655 204 4.658385 9.5031054 Trebouxia 13786 Plants Plants 377 2.59e-100   NTclustered gi|1273623725|gb|KY033354.1| 285713 g9447 i0 100 98.2794117647059 204 0 100 0 1 204 6554 6351 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 20049 377 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
19278784 19278784 PRJNA1004255_S_NODE_12056_length_185_cov_2.647887_g11848_i0 PRJNA1004255 12056 185 2.647887 4.89859095 Trebouxia lynnae 1825957 Plants Plants 161 2.52e-35   NTclustered gi|1812100161|ref|NC_045839.1| 1825957 g11848 i0 94.34 64.7135135135135 106 5 57 1 32 136 185291 185186 Trebouxia sp. TR9 chloroplast, partial genome blastn 11972 161 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
19278856 19278856 PRJNA1004255_S_NODE_8216_length_218_cov_5.908571_g8008_i0 PRJNA1004255 8216 218 5.908571 12.88068478 Stichococcus sp. 29647 Plants Plants 390 3.6e-104   NTclustered gi|1518373087|gb|MK201750.1| 29647 g8008 i0 100 98.7110091743119 211 0 97 0 8 218 1015 805 Stichococcus sp. strain KZ-5-1-1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21519 390 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus sp.
20127410 20127410 PRJNA1004255_S_NODE_17436_length_156_cov_1.982301_g17228_i0 PRJNA1004255 17436 156 1.982301 3.09238956 Trebouxia 13786 Plants Plants 289 9e-74   NTclustered gi|255653894|gb|FJ804760.1| 53268 g17228 i0 100 139.807692307692 156 0 100 0 1 156 1015 1170 Trebouxia arboricola strain SAG 219-1A large subunit ribosomal RNA gene, partial sequence; and hypothetical protein genes, complete cds; chloroplast blastn 21810 289 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia arboricola
21403081 21403081 PRJNA1004255_S_NODE_2837_length_318_cov_2.698182_g2629_i0 PRJNA1004255 2837 318 2.698182 8.58021876 Trebouxiophyceae 75966 Plants Plants 588 1.84e-163   NTclustered gi|1706992012|gb|MN194596.1| 3076 g2629 i0 100 99.2578616352201 318 0 100 0 1 318 578 895 Chlorella sp. SAG 211-34 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 31564 588 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
21403088 21403088 PRJNA1004255_S_NODE_6257_length_242_cov_6.658291_g6049_i0 PRJNA1004255 6257 242 6.658291 16.11306422 Prasiolales 135250 Plants Plants 303 5.45e-78   NTclustered gi|371782094|emb|HE610126.1| 33092 g6049 i0 91.403 92.7396694214876 221 19 91 0 1 221 4943 4723 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 22443 303 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
21830051 21830051 PRJNA1004255_S_NODE_2518_length_331_cov_5.597222_g2310_i0 PRJNA1004255 2518 331 5.597222 18.52680482 Chlamydomonas moewusii 3054 Plants Plants 180 1.3699999999999996e-40   NTclustered gi|18062|emb|X54856.1| 3054 g2310 i0 85.143 17.4108761329305 175 26 53 0 1 175 624 798 C.moewusii cab mRNA for chlorophyll a/b binding protein blastn 5763 180 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas moewusii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;