RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1004255" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1004255 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6531449 6531449 PRJNA1004255_S_NODE_6786_length_235_cov_2.328125_g6578_i0 PRJNA1004255 6786 235 2.328125 5.47109375 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g6578 i0 96.97 0.259574468085106 33 0 14 1 204 235 41 9 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 61 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022
11631854 11631854 PRJNA1004255_S_NODE_7790_length_223_cov_3.438889_g7582_i0 PRJNA1004255 7790 223 3.438889 7.66872247 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 261 3.02e-65   NTclustered gi|695467755|ref|XM_009541406.1| 67593 g7582 i0 87.946 92.7892376681614 224 23 100 4 1 223 643 863 Phytophthora sojae hypothetical protein mRNA blastn 20692 261 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
13754389 13754389 PRJNA1004255_S_NODE_2351_length_338_cov_3.338983_g2143_i0 PRJNA1004255 2351 338 3.338983 11.28576254 root 1 Root_unresolved Root_unresolved 503 7.33e-138   NTclustered gi|833494852|ref|XM_012915026.1| 5866 g2143 i0 96.104 139.843195266272 308 12 91 0 7 314 1 308 Babesia bigemina hypothetical protein, conserved partial mRNA blastn 47267 508 0.990157480314961 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bigemina
16730211 16730211 PRJNA1004255_S_NODE_9694_length_204_cov_1.863354_g9486_i0 PRJNA1004255 9694 204 1.863354 3.80124216 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.001   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g9486 i0 100 0.284313725490196 30 0 15 0 175 204 38 9 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 58 56.5 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022
18852669 18852669 PRJNA1004255_S_NODE_16715_length_159_cov_2.431034_g16507_i0 PRJNA1004255 16715 159 2.431034 3.86534406 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 294 1.98e-75   NTclustered gi|1621572405|gb|MH051920.1| 5893 g16507 i0 100 100 159 0 100 0 1 159 248 90 Tetrahymena borealis strain 1630/5A small subunit ribosomal RNA gene, partial sequence blastn 15900 294 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena borealis
20554448 20554448 PRJNA1004255_S_NODE_6437_length_240_cov_1.908629_g6229_i0 PRJNA1004255 6437 240 1.908629 4.5807096 Kentrophoros sp. 1 BS-2022 2930470 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|2261268989|emb|OX095830.1| 2930470 g6229 i0 100 0.5875 29 0 12 0 1 29 10 38 Kentrophoros sp. 1 BS-2022 partial 18S rRNA gene, isolate SAMEA13863266, clone N10:18S_rRNA::TRINITY_DN246_c0_g1_i2:46-1672(+) blastn 141 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Kentrophoridae Kentrophoros Kentrophoros sp. 1 BS-2022
25227202 25227202 PRJNA1004255_S_NODE_8640_length_214_cov_2.444444_g8432_i0 PRJNA1004255 8640 214 2.444444 5.23111016 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 368 1.65e-97   NTclustered gi|90655130|gb|DQ361251.1| 4784 g8432 i0 97.664 100 214 5 100 0 1 214 235 448 Phytophthora capsici large subunit ribosomal RNA gene, partial sequence blastn 21400 368 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;