RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1004255" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA1004255 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18005000 18005000 PRJNA1004255_S_NODE_4095_length_282_cov_1.769874_g3887_i0 PRJNA1004255 4095 282 1.769874 4.99104468 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 327 3.86e-85   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g3887 i0 87.633 27.8723404255319 283 34 100 1 1 282 2353 2071 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7860 327 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
20554463 20554463 PRJNA1004255_S_NODE_8617_length_214_cov_3.573099_g8409_i0 PRJNA1004255 8617 214 3.573099 7.64643186 Leishmania martiniquensis 1580590 Euglenozoa other_Eukaryota 56.5 0.001   NTclustered gi|2787683124|ref|XM_067322028.1| 1580590 g8409 i0 96.97 0.154205607476636 33 1 15 0 177 209 150 118 Leishmania martiniquensis uncharacterized protein (LSCM1_04524), partial mRNA blastn 33 56.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania martiniquensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;