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contig_metadata

26 rows where analysis = "blastn", bioproject = "PRJNA1002816" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 26 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1002816 · 26 ✖

analysis 1

  • blastn · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
152970 152970 PRJNA1002816_P_NODE_2801_length_678_cov_3.689256_g2647_i0 PRJNA1002816 2801 678 3.689256 25.01315568 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1192 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g2647 i0 98.378 2.18879056047198 678 11 100 0 1 678 10821 11498 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 1484 1192 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
1427709 1427709 PRJNA1002816_P_NODE_3242_length_630_cov_6.280072_g3084_i0 PRJNA1002816 3242 630 6.280072 39.5644536 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1158 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g3084 i0 99.841 5.60952380952381 630 1 100 0 1 630 4878 4249 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 3534 1158 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
1427760 1427760 PRJNA1002816_P_NODE_7042_length_426_cov_3.535411_g6882_i0 PRJNA1002816 7042 426 3.535411 15.06085086 Pearsonema plica 2025202 Nematoda Nematoda 243 2.27e-59   NTclustered gi|585724675|gb|KF836607.1| 2025202 g6882 i0 92.398 17.7230046948357 171 11 40 2 96 265 1997 2166 Capillaria plica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7550 243 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pearsonema Pearsonema plica
1427782 1427782 PRJNA1002816_P_NODE_82_length_2397_cov_2.543460_g67_i0 PRJNA1002816 82 2397 2.54346 60.9667362 Trichinella spiralis 6334 Nematoda Nematoda 1286 0   NTclustered gi|339247610|ref|XM_003375391.1| 6334 g67 i0 76.664 12.9148936170213 2344 533 97 12 1 2337 4887 2551 Trichinella spiralis putative myosin head (Tsp_08431) mRNA, complete cds blastn 30957 1286 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
3979379 3979379 PRJNA1002816_P_NODE_3064_length_649_cov_1.803819_g2907_i0 PRJNA1002816 3064 649 1.803819 11.70678531 Capillaria sp. ALS-2019 2651741 Nematoda Nematoda 178 1.02e-39   NTclustered gi|1811126246|gb|MN526255.1| 2651741 g2907 i0 91.538 52.4083204930663 130 10 20 1 521 649 343 214 Capillaria sp. ALS-2019 large subunit ribosomal RNA gene, partial sequence blastn 34013 178 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Capillaria Capillaria sp. ALS-2019
5255606 5255606 PRJNA1002816_P_NODE_10385_length_346_cov_1.205128_g10225_i0 PRJNA1002816 10385 346 1.205128 4.16974288 Trichinella spiralis 6334 Nematoda Nematoda 333 1.04e-86   NTclustered gi|339242972|ref|XM_003377364.1| 6334 g10225 i0 84.104 6.78323699421965 346 53 99 2 2 346 3094 3438 Trichinella spiralis ATP-dependent RNA helicase DHX8 (Tsp_01590) mRNA, complete cds blastn 2347 333 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
5255763 5255763 PRJNA1002816_P_NODE_1845_length_836_cov_6.246396_g1711_i0 PRJNA1002816 1845 836 6.246396 52.21987056 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1517 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g1711 i0 99.402 5.29306220095694 836 5 100 0 1 836 13104 12269 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 4425 1517 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
5255853 5255853 PRJNA1002816_P_NODE_385_length_1526_cov_47.041982_g338_i0 PRJNA1002816 385 1526 47.041982 717.86064532 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 2747 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g338 i0 99.148 71.7503276539974 1526 13 100 0 1 1526 5649 7174 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 109491 2747 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
6531128 6531128 PRJNA1002816_P_NODE_286_length_1689_cov_1.716584_g244_i0 PRJNA1002816 286 1689 1.716584 28.99310376 Ancylostoma caninum 29170 Nematoda Nematoda 691 0   NTclustered gi|86160923|gb|DQ358106.1| 29170 g244 i0 74.321 1.00296033155713 1694 405 99 27 8 1686 1000 2678 Ancylostoma caninum paramyosin mRNA, complete cds blastn 1694 691 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
7378442 7378442 PRJNA1002816_P_NODE_1646_length_880_cov_3.133829_g1519_i0 PRJNA1002816 1646 880 3.133829 27.5776952 Trichinella 6333 Nematoda Nematoda 669 0   NTclustered gi|339254855|ref|XM_003372603.1| 6334 g1519 i0 82.239 23.2193181818182 777 136 88 2 99 874 1 776 Trichinella spiralis tropomyosin (Tsp_11392) mRNA, complete cds blastn 20433 669 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
9080481 9080481 PRJNA1002816_P_NODE_608_length_1320_cov_2.480353_g544_i0 PRJNA1002816 608 1320 2.480353 32.7406596 Trichinella spiralis 6334 Nematoda Nematoda 732 0   NTclustered gi|339254111|ref|XM_003372231.1| 6334 g544 i0 76.912 68.4765151515151 1334 281 99 20 2 1320 1478 157 Trichinella spiralis moesin/ezrin/radixin protein (Tsp_10541) mRNA, complete cds blastn 90389 732 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
9080504 9080504 PRJNA1002816_P_NODE_7448_length_414_cov_4.756598_g7288_i0 PRJNA1002816 7448 414 4.756598 19.69231572 Trichinella spiralis 6334 Nematoda Nematoda 265 4.7e-66   NTclustered gi|339252409|ref|XM_003371380.1| 6334 g7288 i0 81.288 0.78743961352657 326 61 79 0 4 329 326 1 Trichinella spiralis troponin C, isoform 2 (Tsp_11636) mRNA, complete cds blastn 326 265 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
10356029 10356029 PRJNA1002816_P_NODE_1669_length_874_cov_9.600499_g1540_i0 PRJNA1002816 1669 874 9.600499 83.90836126 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1581 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g1540 i0 99.426 1.33066361556064 871 5 99 0 1 871 7978 8848 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 1163 1581 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
10356264 10356264 PRJNA1002816_P_NODE_9869_length_355_cov_2.354610_g9709_i0 PRJNA1002816 9869 355 2.35461 8.3588655 Trichinella spiralis 6334 Nematoda Nematoda 316 1.08e-81   NTclustered gi|339233103|ref|XM_003381621.1| 6334 g9709 i0 84.936 60.3802816901408 312 47 88 0 44 355 795 484 Trichinella spiralis syntaxin-1A (Tsp_07354) mRNA, complete cds blastn 21435 316 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
12906561 12906561 PRJNA1002816_P_NODE_16391_length_264_cov_1.183246_g16231_i0 PRJNA1002816 16391 264 1.183246 3.12376944 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 488 1.5499999999999999e-133   NTclustered gi|1070586637|gb|KU987805.1| 1904821 g16231 i0 100 99.4886363636364 264 0 100 0 1 264 563 826 Pseudocapillaria tomentosa 18S ribosomal RNA gene, partial sequence blastn 26265 488 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
12906678 12906678 PRJNA1002816_P_NODE_3351_length_620_cov_16.784278_g3193_i0 PRJNA1002816 3351 620 16.784278 104.0625236 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1027 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g3193 i0 96.607 27.1064516129032 619 21 99 0 2 620 4260 4878 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 16806 1027 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
15455500 15455500 PRJNA1002816_P_NODE_1673_length_873_cov_256.286250_g1544_i0 PRJNA1002816 1673 873 256.28625 2237.3789625 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1613 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g1544 i0 100 52.766323024055 873 0 100 0 1 873 3250 2378 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 46065 1613 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
16729678 16729678 PRJNA1002816_P_NODE_11414_length_329_cov_0.902344_g11254_i0 PRJNA1002816 11414 329 0.902344 2.96871176 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 424 5.7e-114   NTclustered gi|1070586637|gb|KU987805.1| 1904821 g11254 i0 98.739 55.5106382978723 238 3 72 0 92 329 1 238 Pseudocapillaria tomentosa 18S ribosomal RNA gene, partial sequence blastn 18263 424 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
16729779 16729779 PRJNA1002816_P_NODE_16294_length_265_cov_1.203125_g16134_i0 PRJNA1002816 16294 265 1.203125 3.18828125 Trichinella spiralis 6334 Nematoda Nematoda 237 6.23e-58   NTclustered gi|339248356|ref|XM_003373118.1| 6334 g16134 i0 84.519 0.90188679245283 239 37 90 0 1 239 315 77 Trichinella spiralis neuronal calcium sensor 2 (Tsp_10012) mRNA, complete cds blastn 239 237 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
16729790 16729790 PRJNA1002816_P_NODE_16734_length_260_cov_1.208556_g16574_i0 PRJNA1002816 16734 260 1.208556 3.1422456 Aonchotheca paranalis 2025203 Nematoda Nematoda 246 1.01e-60   NTclustered gi|1279640587|gb|MF621021.1| 2025203 g16574 i0 92.442 42.5461538461538 172 13 66 0 88 259 3532 3703 Aonchotheca paranalis isolate PL 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11062 246 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Aonchotheca Aonchotheca paranalis
16729971 16729971 PRJNA1002816_P_NODE_7894_length_401_cov_2.939024_g7734_i0 PRJNA1002816 7894 401 2.939024 11.78548624 Strongyloides papillosus 174720 Nematoda Nematoda 374 7.219999999999998e-99   NTclustered gi|687022643|emb|LM525557.1| 174720 g7734 i0 87.195 84.8054862842893 328 42 82 0 67 394 538381 538054 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000003 blastn 34007 374 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
18004459 18004459 PRJNA1002816_P_NODE_10615_length_342_cov_1.371747_g10455_i0 PRJNA1002816 10615 342 1.371747 4.69137474 Trichinella spiralis 6334 Nematoda Nematoda 329 1.33e-85   NTclustered gi|339240906|ref|XM_003376331.1| 6334 g10455 i0 84.57 84.733918128655 337 46 98 6 9 342 2159 1826 Trichinella spiralis zinc finger protein (Tsp_00587) mRNA, complete cds blastn 28979 329 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
20553922 20553922 PRJNA1002816_P_NODE_10817_length_339_cov_0.823308_g10657_i0 PRJNA1002816 10817 339 0.823308 2.79101412 Trichinella spiralis 6334 Nematoda Nematoda 143 1.85e-29   NTclustered gi|339246888|ref|XM_003375030.1| 6334 g10657 i0 85.926 0.398230088495575 135 18 40 1 204 337 897 763 Trichinella spiralis putative LIM domain protein (Tsp_04264) mRNA, complete cds blastn 135 143 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
20554126 20554126 PRJNA1002816_P_NODE_2317_length_748_cov_9.597037_g2176_i0 PRJNA1002816 2317 748 9.597037 71.78583676 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1349 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g2176 i0 99.198 42.418449197861 748 6 100 0 1 748 1476 729 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 31729 1349 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
21829555 21829555 PRJNA1002816_P_NODE_10418_length_345_cov_2.496324_g10258_i0 PRJNA1002816 10418 345 2.496324 8.6123178 Trichinella spiralis 6334 Nematoda Nematoda 119 3.17e-22   NTclustered gi|1938390596|gb|MW302146.1| 6334 g10258 i0 90.11 24.2695652173913 91 9 26 0 255 345 6239 6329 Trichinella spiralis isolate Europe-Poland-22D20-B small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8373 119 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
21829762 21829762 PRJNA1002816_P_NODE_2678_length_694_cov_41.294686_g2525_i0 PRJNA1002816 2678 694 41.294686 286.58512084 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1234 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g2525 i0 99.125 2.10951008645533 686 6 99 0 1 686 7201 7886 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 1464 1234 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;