RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1002816" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1002816 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2276017 2276017 PRJNA1002816_P_NODE_18962_length_247_cov_0.885057_g18802_i0 PRJNA1002816 18962 247 0.885057 2.18609079 Mytilus 6548 Mollusca Mollusca 106 1.69e-18   NTclustered gi|2912398368|ref|XM_071311913.1| 6550 g18802 i0 87.778 1.09311740890688 90 11 36 0 135 224 536 447 PREDICTED: Mytilus edulis small ribosomal subunit protein eS6-like (LOC139519695), mRNA blastn 270 106 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis
9928880 9928880 PRJNA1002816_P_NODE_17168_length_254_cov_1.889503_g17008_i0 PRJNA1002816 17168 254 1.889503 4.79933762 Metazoa 33208 Mollusca Mollusca 464 2.4999999999999994e-126   NTclustered gi|1928112764|gb|MT947788.1| 6523 g17008 i0 99.606 99.9645669291339 254 1 100 0 1 254 1249 1502 Lymnaea stagnalis isolate Lsta_434075 hypothetical protein mRNA, complete cds blastn 25391 464 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
20554233 20554233 PRJNA1002816_P_NODE_9077_length_372_cov_1.745819_g8917_i0 PRJNA1002816 9077 372 1.745819 6.49444668 Mollusca environmental sample 653389 Mollusca Mollusca 291 6.889999999999999e-74   NTclustered gi|156254524|gb|EF528299.1| 653389 g8917 i0 92.195 55.247311827957 205 16 55 0 156 360 761 965 Uncultured mollusc isolate XenLSU7 28S ribosomal RNA gene, partial sequence blastn 20552 291 1 Eukaryota Opisthokonta Metazoa Mollusca         Mollusca environmental sample

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;