RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1002816" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1002816 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
153028 153028 PRJNA1002816_P_NODE_6381_length_448_cov_2.053333_g6221_i0 PRJNA1002816 6381 448 2.053333 9.19893184 Vorticella microstoma 77619 SAR_Eukaryotes SAR_Eukaryotes 773 0   NTclustered gi|21429685|gb|AY101350.1| 77619 g6221 i0 97.768 97.8549107142857 448 10 100 0 1 448 337 784 Vorticella microstoma alpha-tubulin gene, partial cds blastn 43839 773 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella microstoma
5255888 5255888 PRJNA1002816_P_NODE_5925_length_466_cov_1.508906_g5765_i0 PRJNA1002816 5925 466 1.508906 7.03150196 Oxytricha granulifera 5947 SAR_Eukaryotes SAR_Eukaryotes 579 1.6799999999999994e-160   NTclustered gi|21215206|gb|AF510205.1| 5947 g5765 i0 89.056 96.7081545064378 466 51 100 0 1 466 893 1358 Oxytricha granulifera beta-tubulin gene, complete cds blastn 45066 579 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Oxytricha Oxytricha granulifera
5255899 5255899 PRJNA1002816_P_NODE_6385_length_448_cov_1.682667_g6225_i0 PRJNA1002816 6385 448 1.682667 7.53834816 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 261 6.62e-65   NTclustered gi|74830672|emb|CR932267.1| 5888 g6225 i0 79.427 7.52232142857143 384 67 84 8 1 375 1548 1168 ER-type hsp70, Paramecium tetraurelia macronuclear gene blastn 3370 261 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
15455498 15455498 PRJNA1002816_P_NODE_16673_length_260_cov_2.048128_g16513_i0 PRJNA1002816 16673 260 2.048128 5.3251328000000004 Oxytricha trifallax 1172189 SAR_Eukaryotes SAR_Eukaryotes 154 6.31e-33   NTclustered gi|6851292|gb|AF192970.1| 1172189 g16513 i0 83.832 31.7769230769231 167 21 63 4 3 166 1396 1233 Oxytricha trifallax histone H4 gene, complete cds blastn 8262 154 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Oxytricha Oxytricha trifallax
20553920 20553920 PRJNA1002816_P_NODE_10777_length_339_cov_1.736842_g10617_i0 PRJNA1002816 10777 339 1.736842 5.88789438 Opisthonecta henneguyi 6026 SAR_Eukaryotes SAR_Eukaryotes 516 9.44e-142   NTclustered gi|4063597|gb|AF056109.1| 6026 g10617 i0 94.1 61.0294985250737 339 20 100 0 1 339 916 578 Telotrochidium henneguyii translation elongation factor 1-alpha (TEF1) gene, partial cds blastn 20689 516 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Opisthonectidae Opisthonecta Opisthonecta henneguyi
24378721 24378721 PRJNA1002816_P_NODE_10980_length_336_cov_0.844106_g10820_i0 PRJNA1002816 10980 336 0.844106 2.83619616 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.032   NTclustered gi|471220273|ref|XM_004025160.1| 5932 g10820 i0 100 0.0833333333333333 28 0 8 0 212 239 263 236 Ichthyophthirius multifiliis ubiquitin- hect domain protein, putative (IMG5_189580) mRNA, complete cds blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;