RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1002816" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1002816 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11631459 11631459 PRJNA1002816_P_NODE_18690_length_248_cov_0.880000_g18530_i0 PRJNA1002816 18690 248 0.88 2.1824 Dunaliella salina 3046 Plants Plants 248 2.67e-61   NTclustered gi|2599103|gb|AF028833.1|AF028833 3046 g18530 i0 85.081 2.89112903225806 248 32 99 5 3 248 543 299 Dunaliella salina 60S ribosomal protein (DSRP1) mRNA, complete cds blastn 717 248 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
18004543 18004543 PRJNA1002816_P_NODE_14755_length_283_cov_2.219048_g14595_i0 PRJNA1002816 14755 283 2.219048 6.27990584 Micromonas pusilla 38833 Plants Plants 56.5 0.002   NTclustered gi|303286953|ref|XM_003062720.1| 564608 g14595 i0 100 0.208480565371025 30 0 11 0 210 239 1176 1147 Micromonas pusilla CCMP1545 uncharacterized protein (MICPUCDRAFT_42389), partial mRNA blastn 59 56.5 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas pusilla
20553992 20553992 PRJNA1002816_P_NODE_14137_length_291_cov_1.059633_g13977_i0 PRJNA1002816 14137 291 1.059633 3.08353203 Mantoniella tinhauana 3097027 Plants Plants 191 5.48e-44   NTclustered gi|2735153297|gb|CP140082.1| 3097027 g13977 i0 82.569 53.254295532646 218 36 75 2 1 217 2970 2754 Mantoniella tinhauana isolate LFS chromosome 21 blastn 15497 191 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;