RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1002816" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1002816 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1427595 1427595 PRJNA1002816_P_NODE_16202_length_266_cov_1.264249_g16042_i0 PRJNA1002816 16202 266 1.264249 3.36290234 Staphylococcus epidermidis 1282 Bacteria Bacteria 492 1.2099999999999999e-134   NTclustered gi|1214725545|gb|CP022247.1| 1282 g16042 i0 100 103 266 0 100 0 1 266 1163618 1163883 Staphylococcus epidermidis strain AMT chromosome, complete genome blastn 27398 492 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis
3551475 3551475 PRJNA1002816_P_NODE_18743_length_247_cov_1.609195_g18583_i0 PRJNA1002816 18743 247 1.609195 3.97471165 Bacillota 1239 Bacteria Bacteria 313 9.28e-81   NTclustered gi|1829696622|gb|CP048837.1| 1522 g18583 i0 89.474 616.080971659919 247 26 100 0 1 247 489456 489702 [Clostridium] innocuum strain LC-LUMC-CI-001 chromosome, complete genome blastn 152172 313 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium [Clostridium] innocuum
16303374 16303374 PRJNA1002816_P_NODE_15993_length_269_cov_1.178571_g15833_i0 PRJNA1002816 15993 269 1.178571 3.17035599 Planococcus 1372 Bacteria Bacteria 54.7 0.007   NTclustered gi|2533127305|gb|CP129238.1| 3058394 g15833 i0 94.444 0.267657992565056 36 0 13 2 85 118 2051125 2051090 Planococcus liqunii strain N056 chromosome, complete genome blastn 72 54.7 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Caryophanaceae Planococcus Planococcus liqunii
25227113 25227113 PRJNA1002816_P_NODE_9920_length_354_cov_3.861210_g9760_i0 PRJNA1002816 9920 354 3.86121 13.6686834 root 1 Root_unresolved Root_unresolved 649 0   NTclustered gi|1368665179|gb|CP027782.1| 1513 g9760 i0 99.718 123.737288135593 354 1 100 0 1 354 2809521 2809168 Clostridium tetani strain Mfbjulcb2 chromosome, complete genome blastn 43803 649 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium tetani

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;