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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1002816" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA1002816 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2276013 2276013 PRJNA1002816_P_NODE_17842_length_250_cov_0.870056_g17682_i0 PRJNA1002816 17842 250 0.870056 2.17514 Entamoebidae 33084 Evosea other_Eukaryota 279 9.54e-71   NTclustered gi|6625685|gb|AF149916.1|AF149916 110788 g17682 i0 87.449 91.676 247 25 97 5 8 250 2589 2345 Endolimax nana 16S-like small subunit ribosomal RNA gene, complete sequence blastn 22919 279 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Endolimax Endolimax nana
2703275 2703275 PRJNA1002816_P_NODE_803_length_1191_cov_8.289803_g725_i0 PRJNA1002816 803 1191 8.289803 98.73155373 Dictyostelium purpureum 5786 Evosea other_Eukaryota 942 0   NTclustered gi|330804020|ref|XM_003289950.1| 5786 g725 i0 81.69 92.9084802686818 1136 204 95 4 31 1164 1150 17 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_92405), mRNA blastn 110654 942 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
5255768 5255768 PRJNA1002816_P_NODE_18665_length_248_cov_0.880000_g18505_i0 PRJNA1002816 18665 248 0.88 2.1824 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 187 5.8899999999999985e-43   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g18505 i0 82.11 87.8064516129032 218 39 88 0 1 218 218 1 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 21776 187 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6530983 6530983 PRJNA1002816_P_NODE_14686_length_284_cov_1.725118_g14526_i0 PRJNA1002816 14686 284 1.725118 4.89933512 Copromyxa protea 931554 Tubulinea other_Eukaryota 303 6.56e-78   NTclustered gi|508737347|dbj|AB766053.1| 931554 g14526 i0 85.915 11.9577464788732 284 40 100 0 1 284 171 454 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 3396 303 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
6531181 6531181 PRJNA1002816_P_NODE_6686_length_439_cov_1.226776_g6526_i0 PRJNA1002816 6686 439 1.226776 5.38554664 Endolimax piscium 1284676 Evosea other_Eukaryota 401 3.6599999999999996e-107   NTclustered gi|443299289|gb|JX101954.1| 1284676 g6526 i0 98.253 41.1981776765376 229 4 52 0 83 311 1855 1627 Endolimax piscium clone PM1 18S ribosomal RNA gene, partial sequence blastn 18086 401 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Endolimax Endolimax piscium
13754320 13754320 PRJNA1002816_P_NODE_5891_length_467_cov_2.477157_g5731_i0 PRJNA1002816 5891 467 2.477157 11.56832319 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 309 2.44e-79   NTclustered gi|470420192|ref|XM_004337221.1| 1257118 g5731 i0 89.113 53.7558886509636 248 27 53 0 220 467 1124 877 Acanthamoeba castellanii str. Neff actin-1, putative (ACA1_219820), partial mRNA blastn 25104 309 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15455539 15455539 PRJNA1002816_P_NODE_18393_length_248_cov_1.360000_g18233_i0 PRJNA1002816 18393 248 1.36 3.3728 Entamoeba dispar 46681 Evosea other_Eukaryota 324 4.31e-84   NTclustered gi|167381527|ref|XM_001735709.1| 370354 g18233 i0 90.283 99.6048387096774 247 24 99 0 1 247 415 169 Entamoeba dispar SAW760 actin (EDI_325560), partial mRNA blastn 24702 324 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
25227068 25227068 PRJNA1002816_P_NODE_11220_length_332_cov_1.189189_g11060_i0 PRJNA1002816 11220 332 1.189189 3.94810748 Cavenderia 2058187 Evosea other_Eukaryota 219 2.91e-52   NTclustered gi|470260760|ref|XM_004360149.1| 261658 g11060 i0 80.132 50.0451807228916 302 52 90 8 28 325 561 858 Cavenderia fasciculata elongation factor 1 alpha (efaAI), partial mRNA blastn 16615 219 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;