RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1002570" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1002570 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12906348 12906348 PRJNA1002570_P_NODE_46011_length_209_cov_4.242647_g45816_i0 PRJNA1002570 46011 209 4.242647 8.86713223 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 139 1.37e-28   NTclustered gi|2874253918|emb|OY970243.1| 3107663 g45816 i0 80.319 20.866028708134 188 33 88 4 4 187 139340 139153 MAG: Candidatus Eremiobacteraeota bacterium isolate MFD09603.bin.1.33 genome assembly, chromosome: 1 blastn 4361 139 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
23104724 23104724 PRJNA1002570_P_NODE_38399_length_248_cov_0.880000_g38204_i0 PRJNA1002570 38399 248 0.88 2.1824 Vulcanimicrobium alpinum 3016050 Bacteria Bacteria 134 7.79e-27   NTclustered gi|2416250577|dbj|AP025523.1| 3016050 g38204 i0 83.221 0.600806451612903 149 22 59 2 96 241 444220 444072 Vulcanimicrobium alpinum WC8-2 DNA, complete genome blastn 149 134 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Vulcanimicrobium Vulcanimicrobium alpinum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;