RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1002570" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1002570 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
152569 152569 PRJNA1002570_P_NODE_41461_length_244_cov_1.573099_g41266_i0 PRJNA1002570 41461 244 1.573099 3.83836156 uncultured Ruficoccus sp. 2175960 Bacteria Bacteria 176 1.25e-39   NTclustered gi|2907625921|emb|OZ223481.1| 2175960 g41266 i0 82.212 57.6844262295082 208 33 84 4 39 244 652419 652624 MAG: uncultured Ruficoccus sp. isolate b2a3d85c-2e17-47e2-9e32-7ac6437316b9 genome assembly, chromosome: 10 blastn 14075 176 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Cerasicoccaceae Ruficoccus uncultured Ruficoccus sp.
12905973 12905973 PRJNA1002570_P_NODE_22771_length_284_cov_2.355450_g22576_i0 PRJNA1002570 22771 284 2.35545 6.689478 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 198 3.1799999999999998e-46   NTclustered gi|2874253690|emb|OY969416.1| 412056 g22576 i0 79.371 1.63732394366197 286 55 100 2 1 284 4505446 4505163 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 465 198 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
14181019 14181019 PRJNA1002570_P_NODE_29892_length_267_cov_3.350515_g29697_i0 PRJNA1002570 29892 267 3.350515 8.94587505 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 93.5 1.44e-14   NTclustered gi|2874253690|emb|OY969416.1| 412056 g29697 i0 91.176 14.7752808988764 68 6 26 0 2 69 4209 4142 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 3945 93.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
14181229 14181229 PRJNA1002570_P_NODE_42612_length_243_cov_0.905882_g42417_i0 PRJNA1002570 42612 243 0.905882 2.20129326 Actomonas aquatica 2866162 Bacteria Bacteria 154 5.84e-33   NTclustered gi|2647674565|gb|CP139781.1| 2866162 g42417 i0 81.538 15.9465020576132 195 28 79 8 50 240 1718749 1718939 Actomonas aquatica strain WL0086 chromosome, complete genome blastn 3875 154 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Actomonas Actomonas aquatica
15454776 15454776 PRJNA1002570_P_NODE_15193_length_310_cov_4.042194_g14998_i0 PRJNA1002570 15193 310 4.042194 12.5308014 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 139 2.16e-28   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g14998 i0 94.444 3.62903225806452 90 5 29 0 197 286 830175 830264 Luteolibacter sp. SL250 chromosome blastn 1125 139 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
20553606 20553606 PRJNA1002570_P_NODE_34397_length_255_cov_1.692308_g34202_i0 PRJNA1002570 34397 255 1.692308 4.3153854 Haloferula helveola 490095 Bacteria Bacteria 174 4.74e-39   NTclustered gi|2647781590|dbj|AP024702.1| 490095 g34202 i0 79.608 11.7254901960784 255 42 98 8 6 255 1772460 1772709 Haloferula helveola CN-1 DNA, complete genome blastn 2990 174 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula helveola
24378006 24378006 PRJNA1002570_P_NODE_12620_length_337_cov_0.833333_g12425_i0 PRJNA1002570 12620 337 0.833333 2.80833221 Luteolibacter luteus 2728835 Bacteria Bacteria 174 6.51e-39   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g12425 i0 91.339 15.9584569732938 127 11 38 0 6 132 2144288 2144414 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 5378 174 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;