RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1002570" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1002570 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2275829 2275829 PRJNA1002570_P_NODE_30542_length_266_cov_1.440415_g30347_i0 PRJNA1002570 30542 266 1.440415 3.8315039 Leishmania 5658 Euglenozoa other_Eukaryota 207 4.91e-49   NTclustered gi|9864198|gb|AF291716.1|AF291716 5660 g30347 i0 81.111 89.2781954887218 270 41 99 10 1 265 2428 2164 Leishmania braziliensis heat shock protein 70 (hsp70) gene, complete cds blastn 23748 207 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
3551349 3551349 PRJNA1002570_P_NODE_34783_length_254_cov_1.635359_g34588_i0 PRJNA1002570 34783 254 1.635359 4.15381186 Kinetoplastea 5653 Euglenozoa other_Eukaryota 464 2.4999999999999994e-126   NTclustered gi|59891965|gb|AY753625.1| 313291 g34588 i0 99.606 82.259842519685 254 1 100 0 1 254 729 982 Bodonidae sp. Pan2 18S ribosomal RNA gene, partial sequence blastn 20894 464 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae   Bodonidae sp. Pan2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;