RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1002570" and tax_phylum = "Cyanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1002570 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2702283 2702283 PRJNA1002570_P_NODE_11343_length_351_cov_1.902878_g11148_i0 PRJNA1002570 11343 351 1.902878 6.67910178 Gloeobacter kilaueensis 1416614 Bacteria Bacteria 202 3.11e-47   NTclustered gi|553880805|gb|CP003587.1| 1183438 g11148 i0 83.562 52.2450142450142 219 32 62 2 14 230 2784389 2784173 Gloeobacter kilaueensis JS1, complete genome blastn 18338 202 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Gloeobacterales Gloeobacteraceae Gloeobacter Gloeobacter kilaueensis
6104007 6104007 PRJNA1002570_P_NODE_8265_length_396_cov_1.421053_g8070_i0 PRJNA1002570 8265 396 1.421053 5.62736988 Bacteria 2 Bacteria Bacteria 54.7 0.011   NTclustered gi|2754673971|gb|CP159837.1| 2792601 g8070 i0 94.286 0.252525252525253 35 2 9 0 10 44 1931130 1931096 Planktothricoides raciborskii GIHE-MW2 chromosome, complete genome blastn 100 54.7 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Oscillatoriaceae Planktothricoides Planktothricoides raciborskii
7805131 7805131 PRJNA1002570_P_NODE_43387_length_242_cov_0.911243_g43192_i0 PRJNA1002570 43387 242 0.911243 2.20520806 Halotia branconii 1620816 Bacteria Bacteria 54.7 0.006   NTclustered gi|2500982325|gb|CP124543.1| 1539056 g43192 i0 100 0.119834710743802 29 0 12 0 11 39 2629042 2629014 Halotia branconii CENA392 chromosome, complete genome blastn 29 54.7 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Nodulariaceae Halotia Halotia branconii
16729413 16729413 PRJNA1002570_P_NODE_36834_length_250_cov_0.870056_g36639_i0 PRJNA1002570 36834 250 0.870056 2.17514 Cyanobium sp. NS01 261284 Bacteria Bacteria 257 4.47e-64   NTclustered gi|1895767613|gb|CP047940.1| 261284 g36639 i0 86.008 0.972 243 30 96 4 2 242 1443849 1443609 Cyanobium sp. NS01 chromosome, complete genome blastn 243 257 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Cyanobium Cyanobium sp. NS01

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;