RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1002570" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 5 ✖

bioproject 1

  • PRJNA1002570 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
152346 152346 PRJNA1002570_P_NODE_28561_length_271_cov_1.540404_g28366_i0 PRJNA1002570 28561 271 1.540404 4.17449484 Leptotrichia sp. SK-5 3075818 Bacteria Bacteria 496 9.55e-136   NTclustered gi|2899356158|dbj|AP028931.1| 3075818 g28366 i0 100 5.94464944649446 268 0 99 0 4 271 2350776 2350509 Leptotrichia sp. SK-5 DNA, complete genome blastn 1611 496 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. SK-5
1427248 1427248 PRJNA1002570_P_NODE_38402_length_248_cov_0.880000_g38207_i0 PRJNA1002570 38402 248 0.88 2.1824 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 420 5.34e-113   NTclustered gi|922689899|gb|CP012410.1| 712357 g38207 i0 97.177 301.366935483871 248 7 100 0 1 248 52862 53109 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 74739 420 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
9079833 9079833 PRJNA1002570_P_NODE_29028_length_270_cov_1.253807_g28833_i0 PRJNA1002570 29028 270 1.253807 3.3852789 Fusobacterium polymorphum 76857 Bacteria Bacteria 494 3.4199999999999996e-135   NTclustered gi|2706496642|gb|CP084152.1| 76857 g28833 i0 99.63 68.6037037037037 270 1 100 0 1 270 2416548 2416279 Fusobacterium polymorphum strain KCOM2594 chromosome, complete genome blastn 18523 494 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
22677699 22677699 PRJNA1002570_P_NODE_8698_length_388_cov_1.955556_g8503_i0 PRJNA1002570 8698 388 1.955556 7.58755728 Fusobacterium 848 Bacteria Bacteria 717 0   NTclustered gi|2573686249|gb|CP133474.1| 851 g8503 i0 100 481.662371134021 388 0 100 0 1 388 322332 321945 Fusobacterium nucleatum strain LMG 13131 chromosome, complete genome blastn 186885 717 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
23104481 23104481 PRJNA1002570_P_NODE_23539_length_283_cov_1.204762_g23344_i0 PRJNA1002570 23539 283 1.2047620000000001 3.40947646 Fusobacterium animalis 76859 Bacteria Bacteria 518 2.14e-142   NTclustered gi|2706064790|gb|CP077192.1| 76859 g23344 i0 99.647 5.00706713780919 283 1 100 0 1 283 2557672 2557954 Fusobacterium animalis strain SB024 chromosome, complete genome blastn 1417 518 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;