RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1002570" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1002570 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12906096 12906096 PRJNA1002570_P_NODE_29511_length_268_cov_2.733333_g29316_i0 PRJNA1002570 29511 268 2.733333 7.32533244 Proschkinia sp. SZCZR1824 2588390 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.025   NTclustered gi|1681061561|gb|MH800316.1| 2588390 g29316 i0 92.105 0.141791044776119 38 1 14 2 212 249 24512 24477 Proschkinia sp. SZCZR1824 mitochondrion, complete genome blastn 38 52.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Proschkiniaceae Proschkinia Proschkinia sp. SZCZR1824
16729329 16729329 PRJNA1002570_P_NODE_31774_length_262_cov_2.317460_g31579_i0 PRJNA1002570 31774 262 2.31746 6.0717452 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 409 1.23e-109   NTclustered gi|2088238071|ref|NC_056910.1| 88167 g31579 i0 95.057 55.8473282442748 263 8 100 3 1 262 13035 13293 Poterioochromonas malhamensis strain SZCZR2049 plastid, complete genome blastn 14632 409 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
19277810 19277810 PRJNA1002570_P_NODE_22416_length_285_cov_1.811321_g22221_i0 PRJNA1002570 22416 285 1.811321 5.16226485 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 527 3.59e-145   NTclustered gi|301093321|ref|XM_002997463.1| 403677 g22221 i0 100 3.24210526315789 285 0 100 0 1 285 754 1038 Phytophthora infestans T30-4 NADH-cytochrome b5 reductase, putative (PITG_19023), mRNA blastn 924 527 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
19277886 19277886 PRJNA1002570_P_NODE_27056_length_275_cov_1.143564_g26861_i0 PRJNA1002570 27056 275 1.143564 3.144801 Eimeria anguillae 947528 SAR_Eukaryotes SAR_Eukaryotes 75 5.39e-9   NTclustered gi|324022087|gb|GU593704.1| 947528 g26861 i0 79.439 18.4472727272727 107 20 39 2 1 106 1509 1614 Eimeria anguillae strain 128 28S ribosomal RNA gene, partial sequence blastn 5073 75 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria anguillae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;