RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1002570" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA1002570 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2275829 2275829 PRJNA1002570_P_NODE_30542_length_266_cov_1.440415_g30347_i0 PRJNA1002570 30542 266 1.440415 3.8315039 Leishmania 5658 Euglenozoa other_Eukaryota 207 4.91e-49   NTclustered gi|9864198|gb|AF291716.1|AF291716 5660 g30347 i0 81.111 89.2781954887218 270 41 99 10 1 265 2428 2164 Leishmania braziliensis heat shock protein 70 (hsp70) gene, complete cds blastn 23748 207 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
2702350 2702350 PRJNA1002570_P_NODE_1543_length_921_cov_5.580189_g1373_i0 PRJNA1002570 1543 921 5.580189 51.39354069 Naegleria sp. 37103 Heterolobosea other_Eukaryota 1701 0   NTclustered gi|2651357798|gb|PP174311.1| 37103 g1373 i0 100 25.3691639522258 921 0 100 0 1 921 3971 3051 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 23365 1701 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
3551349 3551349 PRJNA1002570_P_NODE_34783_length_254_cov_1.635359_g34588_i0 PRJNA1002570 34783 254 1.635359 4.15381186 Kinetoplastea 5653 Euglenozoa other_Eukaryota 464 2.4999999999999994e-126   NTclustered gi|59891965|gb|AY753625.1| 313291 g34588 i0 99.606 82.259842519685 254 1 100 0 1 254 729 982 Bodonidae sp. Pan2 18S ribosomal RNA gene, partial sequence blastn 20894 464 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae   Bodonidae sp. Pan2
20127102 20127102 PRJNA1002570_P_NODE_23596_length_283_cov_0.966667_g23401_i0 PRJNA1002570 23596 283 0.966667 2.73566761 Naegleria 5761 Heterolobosea other_Eukaryota 507 4.64e-139   NTclustered gi|2618963742|gb|OR769034.1| 5762 g23401 i0 98.94 70.8657243816254 283 3 100 0 1 283 3085 3367 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 20055 507 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;