RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1002570" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA1002570 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
152079 152079 PRJNA1002570_P_NODE_12601_length_337_cov_1.166667_g12406_i0 PRJNA1002570 12601 337 1.166667 3.93166779 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 195 4.99e-45   NTclustered gi|2814788387|emb|OY762897.2| 2838779 g12406 i0 78.457 39.2759643916914 311 57 91 9 30 335 3334819 3335124 MAG: Candidatus Binatia bacterium isolate 08c4157d-86a7-49cc-8b26-f3076a3ae996 genome assembly, chromosome: 1 blastn 13236 195 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
2702865 2702865 PRJNA1002570_P_NODE_45083_length_234_cov_2.565217_g44888_i0 PRJNA1002570 45083 234 2.565217 6.00260778 Candidatus Poribacteria bacterium 2026781 Bacteria Bacteria 56.5 0.002   NTclustered gi|2575820324|emb|OY730443.1| 2026781 g44888 i0 96.97 0.141025641025641 33 1 14 0 199 231 3458654 3458686 MAG: Candidatus Poribacteria bacterium isolate dbacca32-2332-4c09-a5ad-da9f5ab17b7d genome assembly, chromosome: 1 blastn 33 56.5 1 Bacteria Bacteria candidate phyla   Candidatus Poribacteria         Candidatus Poribacteria bacterium
20553444 20553444 PRJNA1002570_P_NODE_2357_length_707_cov_2.768139_g2175_i0 PRJNA1002570 2357 707 2.768139 19.57074273 Minisyncoccota bacterium 2053589 Bacteria Bacteria 60.2 4.22e-4   NTclustered gi|2556887672|gb|CP129474.1| 2053589 g2175 i0 97.143 0.213578500707214 35 1 5 0 538 572 347577 347611 MAG: Candidatus Paceibacterota bacterium isolate cMAG.22 chromosome, complete genome blastn 151 60.2 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
23104568 23104568 PRJNA1002570_P_NODE_28459_length_271_cov_1.949495_g28264_i0 PRJNA1002570 28459 271 1.949495 5.28313145 Candidatus Saccharibacteria bacterium oral taxon 488 713059 Bacteria Bacteria 165 3.0600000000000004e-36   NTclustered gi|1805661181|gb|CP047921.1| 713059 g28264 i0 96.04 2.59778597785978 101 4 37 0 1 101 503971 504071 Candidatus Saccharibacteria bacterium oral taxon 488 strain FS05P-B chromosome, complete genome blastn 704 165 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 488

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;