RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1002570" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1002570 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
152725 152725 PRJNA1002570_P_NODE_9201_length_380_cov_2.644951_g9006_i0 PRJNA1002570 9201 380 2.644951 10.0508138 Arcyria sp. 'tenuissima' 3129282 Evosea other_Eukaryota 556 6.3e-154   NTclustered gi|2698738389|gb|PP491458.1| 3129282 g9006 i0 93.005 1.67631578947368 386 19 99 5 1 379 3443 3827 Arcyria sp. 'tenuissima' voucher sc32644 internal transcribed spacer region, partial sequence blastn 637 556 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria sp. 'tenuissima'
6530630 6530630 PRJNA1002570_P_NODE_35246_length_252_cov_2.581006_g35051_i0 PRJNA1002570 35246 252 2.581006 6.50413512 Fuligo septica 159720 Evosea other_Eukaryota 231 2.73e-56   NTclustered gi|37515398|emb|AJ584697.1| 159720 g35051 i0 88 3.06746031746032 200 18 79 5 55 252 14003 13808 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 773 231 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
6530860 6530860 PRJNA1002570_P_NODE_7666_length_407_cov_3.221557_g7472_i0 PRJNA1002570 7666 407 3.221557 13.11173699 Physarum polycephalum 5791 Evosea other_Eukaryota 501 3.23e-137   NTclustered gi|3221|emb|V01159.1| 5791 g7472 i0 88.916 56.2653562653563 415 34 100 10 1 407 1939 1529 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 22900 501 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
19278041 19278041 PRJNA1002570_P_NODE_35336_length_252_cov_1.888268_g35141_i0 PRJNA1002570 35336 252 1.888268 4.75843536 Cavostelium apophysatum 435410 Evosea other_Eukaryota 466 6.89e-127   NTclustered gi|260909290|gb|FJ766476.1| 435410 g35141 i0 100 24.5119047619048 252 0 100 0 1 252 355 104 Cavostelium apophysatum culture-collection ATCC:38567 clone 9 18S ribosomal RNA gene, partial sequence blastn 6177 466 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Cavostelium Cavostelium apophysatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;