RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1001940" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1001940 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6526592 6526592 PRJNA1001940_S_NODE_96266_length_221_cov_1.634831_g95212_i0 PRJNA1001940 96266 221 1.634831 3.61297651 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 285 1.7699999999999998e-72   NTclustered gi|56755494|gb|AY814194.1| 6182 g95212 i0 89.744 81.8099547511312 234 8 100 3 1 221 386 616 Schistosoma japonicum SJCHGC03850 protein mRNA, complete cds blastn 18080 285 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
12901057 12901057 PRJNA1001940_S_NODE_31931_length_369_cov_4.849693_g30880_i0 PRJNA1001940 31931 369 4.849693 17.89536717 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 660 0   NTclustered gi|1124902734|gb|AY812498.2| 6182 g30880 i0 98.916 99.9593495934959 369 4 100 0 1 369 1023 1391 Schistosoma japonicum SJCHGC01615 protein mRNA, partial cds blastn 36885 660 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
16723997 16723997 PRJNA1001940_S_NODE_208374_length_151_cov_81.657407_g207320_i0 PRJNA1001940 208374 151 81.657407 123.30268457 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 259 6.76e-65   NTclustered gi|56757963|gb|AY815390.1| 6182 g207320 i0 97.403 128.370860927152 154 1 100 3 1 151 1741 1894 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 19384 259 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;