RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1001940" and tax_kingdom = "Shotokuvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 3 ✖

bioproject 1

  • PRJNA1001940 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5250801 5250801 PRJNA1001940_S_NODE_70405_length_259_cov_1.898148_g69351_i0 PRJNA1001940 70405 259 1.898148 4.91620332 Erythroparvovirus ungulate1 3052194 Viruses Viruses 473 4.25e-129   NTclustered gi|2500352099|ref|NC_074970.1| 172297 g69351 i0 99.614 9.38996138996139 259 1 100 0 1 259 3057 2799 Bovine parvovirus 3 putative non-structural protein and putative capsid protein genes, complete cds blastn 2432 473 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Erythroparvovirus Erythroparvovirus ungulate1
6523862 6523862 PRJNA1001940_S_NODE_101406_length_215_cov_2.511628_g100352_i0 PRJNA1001940 101406 215 2.511628 5.4000002 Erythroparvovirus ungulate1 3052194 Viruses Viruses 398 2.1099999999999997e-106   NTclustered gi|2277478564|gb|MZ502233.1| 172297 g100352 i0 100 7.69302325581395 215 0 100 0 1 215 3965 3751 Bovine parvovirus 3 isolate BCS1/USA nonstructural protein and structural protein genes, complete cds blastn 1654 398 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Erythroparvovirus Erythroparvovirus ungulate1
11626239 11626239 PRJNA1001940_S_NODE_51810_length_300_cov_4.066148_g50756_i0 PRJNA1001940 51810 300 4.066148 12.198444 Erythroparvovirus ungulate1 3052194 Viruses Viruses 544 3.78e-150   NTclustered gi|2500352099|ref|NC_074970.1| 172297 g50756 i0 99.333 8.95 300 2 100 0 1 300 1932 2231 Bovine parvovirus 3 putative non-structural protein and putative capsid protein genes, complete cds blastn 2685 544 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Erythroparvovirus Erythroparvovirus ungulate1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;