RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1001940" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 8 ✖

bioproject 1

  • PRJNA1001940 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1421459 1421459 PRJNA1001940_S_NODE_180702_length_161_cov_2.033898_g179648_i0 PRJNA1001940 180702 161 2.033898 3.27457578 Fusobacterium polymorphum 76857 Bacteria Bacteria 265 1.5799999999999998e-66   NTclustered gi|2706071841|gb|CP077111.1| 76857 g179648 i0 96.273 99.7763975155279 161 6 100 0 1 161 1293393 1293233 Fusobacterium polymorphum strain KCOM1275 chromosome, complete genome blastn 16064 265 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
3973788 3973788 PRJNA1001940_S_NODE_35424_length_354_cov_4.938907_g34370_i0 PRJNA1001940 35424 354 4.938907 17.48373078 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 507 5.95e-139   NTclustered gi|922689899|gb|CP012410.1| 712357 g34370 i0 92.614 0.994350282485876 352 26 99 0 3 354 684627 684276 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 352 507 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
9074288 9074288 PRJNA1001940_S_NODE_186488_length_159_cov_1.241379_g185434_i0 PRJNA1001940 186488 159 1.241379 1.97379261 Fusobacterium polymorphum 76857 Bacteria Bacteria 255 9.35e-64   NTclustered gi|2673502234|gb|CP144257.1| 76857 g185434 i0 95.597 82.3962264150943 159 7 100 0 1 159 388503 388661 Fusobacterium polymorphum strain IOOS_98 chromosome blastn 13101 255 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
12901478 12901478 PRJNA1001940_S_NODE_63491_length_272_cov_3.563319_g62437_i0 PRJNA1001940 63491 272 3.563319 9.69222768 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 492 1.24e-134   NTclustered gi|1276709865|gb|CP024700.1| 2663009 g62437 i0 99.265 41.6691176470588 272 2 100 0 1 272 1582078 1582349 Fusobacterium pseudoperiodonticum strain KCOM 1263 chromosome, complete genome blastn 11334 492 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
13753027 13753027 PRJNA1001940_S_NODE_32891_length_365_cov_3.304348_g31839_i0 PRJNA1001940 32891 365 3.304348 12.0608702 Leptotrichia 32067 Bacteria Bacteria 652 0   NTclustered gi|470484715|ref|NR_076664.1| 40542 g31839 i0 98.904 197.545205479452 365 4 100 0 1 365 393 29 Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence blastn 72104 652 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
20126085 20126085 PRJNA1001940_S_NODE_44816_length_320_cov_7.111913_g43762_i0 PRJNA1001940 44816 320 7.111913 22.7581216 Fusobacterium 848 Bacteria Bacteria 547 3.139999999999999e-151   NTclustered gi|1370537877|gb|CP028108.1| 860 g43762 i0 100 322.675 296 0 93 0 1 296 460148 459853 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 103256 547 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
23099583 23099583 PRJNA1001940_S_NODE_30399_length_376_cov_4.498498_g29348_i0 PRJNA1001940 30399 376 4.498498 16.91435248 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 656 0   NTclustered gi|1276705688|gb|CP024698.1| 2663009 g29348 i0 98.138 81.5797872340426 376 7 100 0 1 376 895852 895477 Fusobacterium pseudoperiodonticum strain KCOM 1283 chromosome, complete genome blastn 30674 656 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
23951965 23951965 PRJNA1001940_S_NODE_34039_length_360_cov_4.542587_g32985_i0 PRJNA1001940 34039 360 4.542587 16.3533132 Fusobacterium 848 Bacteria Bacteria 577 4.549999999999999e-160   NTclustered gi|2704996929|gb|CP077149.1| 851 g32985 i0 96.552 16.5083333333333 348 12 97 0 10 357 1427858 1428205 Fusobacterium nucleatum strain KCOM2013 chromosome, complete genome blastn 5943 582 0.991408934707904 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;