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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA1001940" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 11 ✖

bioproject 1

  • PRJNA1001940 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
147092 147092 PRJNA1001940_S_NODE_203581_length_152_cov_3.522936_g202527_i0 PRJNA1001940 203581 152 3.522936 5.35486272 Ankistrodesmus stipitatus 3109 Plants Plants 110 7.27e-20   NTclustered gi|2320865241|gb|OM683276.1| 3109 g202527 i0 89.535 2.22368421052632 86 9 57 0 1 86 92 7 Ankistrodesmus stipitatus voucher CCMA-UFSCar 277 translation elongation factor Tu gene, partial cds; chloroplast blastn 338 110 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Ankistrodesmus Ankistrodesmus stipitatus
1421527 1421527 PRJNA1001940_S_NODE_184682_length_159_cov_3.387931_g183628_i0 PRJNA1001940 184682 159 3.387931 5.38681029 Coccomyxa subellipsoidea 248742 Plants Plants 78.7 2.17e-10   NTclustered gi|545367990|ref|XM_005648729.1| 574566 g183628 i0 87.879 6.94339622641509 66 8 42 0 1 66 611 676 Coccomyxa subellipsoidea C-169 40S ribosomal protein S8 partial mRNA blastn 1104 78.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
5250260 5250260 PRJNA1001940_S_NODE_32585_length_366_cov_7.343653_g31534_i0 PRJNA1001940 32585 366 7.343653 26.87776998 [Myrmecia] bisecta 41462 Plants Plants 237 8.940000000000001e-58   NTclustered gi|255506491|gb|GQ168957.1| 41462 g31534 i0 95.333 77.6393442622951 150 5 84 2 217 366 262 115 Myrmecia bisecta strain SAG 2043 23S large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 28416 237 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
15027351 15027351 PRJNA1001940_S_NODE_196232_length_154_cov_4.801802_g195178_i0 PRJNA1001940 196232 154 4.801802 7.39477508 Coccomyxa 41891 Plants Plants 248 1.5e-61   NTclustered gi|1360638129|gb|AC277064.1| 574566 g195178 i0 96.053 96.0584415584416 152 6 99 0 3 154 1316 1467 Coccomyxa subellipsoidea C-169 clone FAHX137-B20, complete sequence blastn 14793 248 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
15027442 15027442 PRJNA1001940_S_NODE_58112_length_284_cov_5.161826_g57058_i0 PRJNA1001940 58112 284 5.161826 14.65958584 Eukaryota 2759 Plants Plants 520 5.98e-143   NTclustered gi|359385177|emb|FR865588.1| 51685 g57058 i0 99.648 99.7816901408451 284 1 100 0 1 284 604 887 Chlamydomonas bipapillata genomic DNA containing 18S rRNA gene, ITS1, culture collection CCAP 11/47 blastn 28338 520 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chloromonas Chloromonas asteroidea
15449126 15449126 PRJNA1001940_S_NODE_157113_length_173_cov_1.846154_g156059_i0 PRJNA1001940 157113 173 1.846154 3.19384642 Coccomyxa viridis 1274662 Plants Plants 106 1.1e-18   NTclustered gi|2663407678|emb|OZ004252.1| 1274662 g156059 i0 88.764 3.59537572254335 89 7 51 3 1 88 42714 42628 Coccomyxa viridis genome assembly, organelle: mitochondrion blastn 622 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
15450499 15450499 PRJNA1001940_S_NODE_56973_length_287_cov_3.483607_g55919_i0 PRJNA1001940 56973 287 3.483607 9.99795209 Trebouxia sp. SL0000003 3350044 Plants Plants 87.9 7.27e-13   NTclustered gi|2917929619|emb|OZ234907.1| 3350044 g55919 i0 98 0.174216027874564 50 1 17 0 238 287 3558188 3558139 Trebouxia sp. SL0000003 genome assembly, chromosome: 2 blastn 50 87.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
16302015 16302015 PRJNA1001940_S_NODE_182673_length_160_cov_2.461538_g181619_i0 PRJNA1001940 182673 160 2.461538 3.9384608 Coccomyxa 41891 Plants Plants 263 5.629999999999999e-66   NTclustered gi|1360638129|gb|AC277064.1| 574566 g181619 i0 96.25 78.68125 160 6 100 0 1 160 1301 1142 Coccomyxa subellipsoidea C-169 clone FAHX137-B20, complete sequence blastn 12589 263 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
19271478 19271478 PRJNA1001940_S_NODE_125876_length_193_cov_2.880000_g124822_i0 PRJNA1001940 125876 193 2.88 5.5584 Trebouxia sp. SL0000003 3350044 Plants Plants 209 9.33e-50   NTclustered gi|2917929619|emb|OZ234907.1| 3350044 g124822 i0 91.946 0.772020725388601 149 12 77 0 45 193 150469 150617 Trebouxia sp. SL0000003 genome assembly, chromosome: 2 blastn 149 209 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
21822346 21822346 PRJNA1001940_S_NODE_103238_length_213_cov_2.329412_g102184_i0 PRJNA1001940 103238 213 2.329412 4.96164756 Coccomyxa subellipsoidea 248742 Plants Plants 165 2.31e-36   NTclustered gi|545365417|ref|XM_005647625.1| 574566 g102184 i0 80.93 8 215 35 99 5 2 213 358 147 Coccomyxa subellipsoidea C-169 ribosomal protein L5 mRNA blastn 1704 165 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
23098030 23098030 PRJNA1001940_S_NODE_122659_length_196_cov_1.254902_g121605_i0 PRJNA1001940 122659 196 1.254902 2.45960792 uncultured Trebouxiophyceae 167235 Plants Plants 291 3.3e-74   NTclustered gi|1735341974|gb|MN419174.1| 167235 g121605 i0 96.591 34.6479591836735 176 4 89 2 1 175 412 586 Uncultured Trebouxiophyceae clone EukCL56 large subunit ribosomal RNA gene, partial sequence blastn 6791 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Trebouxiophyceae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;