RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1001940" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA1001940 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2698312 2698312 PRJNA1001940_S_NODE_86703_length_233_cov_2.273684_g85649_i0 PRJNA1001940 86703 233 2.273684 5.29768372 Leptolyngbya sp. 7M 2812896 Bacteria Bacteria 272 1.47e-68   NTclustered gi|2028908486|gb|CP070897.1| 2812896 g85649 i0 87.983 72.1330472103004 233 24 99 2 1 231 2151781 2152011 Leptolyngbya sp. 7M chromosome blastn 16807 272 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya sp. 7M
9927584 9927584 PRJNA1001940_S_NODE_56528_length_288_cov_5.053061_g55474_i0 PRJNA1001940 56528 288 5.053061 14.55281568 root 1 Root_unresolved Root_unresolved 54.7 0.007   NTclustered gi|75699950|gb|CP000117.1| 240292 g55474 i0 100 1.34027777777778 29 0 10 0 177 205 5366102 5366130 Anabaena variabilis ATCC 29413, complete genome blastn 386 54.7 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Trichormus Trichormus variabilis
21822544 21822544 PRJNA1001940_S_NODE_115758_length_201_cov_3.240506_g114704_i0 PRJNA1001940 115758 201 3.240506 6.51341706 uncultured Chroococcidiopsis sp. 259957 Bacteria Bacteria 289 1.2199999999999998e-73   NTclustered gi|225696187|gb|FJ805854.1| 259957 g114704 i0 93.367 126.452736318408 196 12 97 1 5 199 3201 3006 Uncultured Chroococcidiopsis sp. clone AR2_1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 25417 289 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;