RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1000943" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1000943 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2695312 2695312 PRJNA1000943_P_NODE_143_length_1549_cov_2.367209_g116_i0 PRJNA1000943 143 1549 2.367209 36.66806741 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 2540 0   NTclustered gi|2874254019|emb|OY970344.1| 412056 g116 i0 96.26 103.848934796643 1551 54 100 4 1 1549 737142 735594 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.c.3 genome assembly, chromosome: 1 blastn 160862 2540 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
3971486 3971486 PRJNA1000943_P_NODE_7264_length_304_cov_1.350649_g7126_i0 PRJNA1000943 7264 304 1.350649 4.10597296 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 289 1.9799999999999996e-73   NTclustered gi|2874253952|emb|OY970277.1| 412056 g7126 i0 89.823 443.861842105263 226 22 74 1 35 259 2749638 2749863 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 blastn 134934 289 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
9072538 9072538 PRJNA1000943_P_NODE_12088_length_250_cov_1.418079_g11950_i0 PRJNA1000943 12088 250 1.418079 3.5451975 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 281 2.65e-71   NTclustered gi|2874253690|emb|OY969416.1| 412056 g11950 i0 91.346 70.06 208 15 83 3 1 207 1315122 1314917 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 17515 281 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
14173816 14173816 PRJNA1000943_P_NODE_7292_length_304_cov_0.874459_g7154_i0 PRJNA1000943 7292 304 0.874459 2.65835536 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 374 5.319999999999998e-99   NTclustered gi|2874253690|emb|OY969416.1| 412056 g7154 i0 89.333 76.6842105263158 300 29 98 3 1 298 1315203 1315501 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 23312 374 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
15447914 15447914 PRJNA1000943_P_NODE_7973_length_292_cov_1.552511_g7835_i0 PRJNA1000943 7973 292 1.552511 4.53333212 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 359 1.42e-94   NTclustered gi|2874254020|emb|OY970345.1| 412056 g7835 i0 89.68 200.332191780822 281 29 96 0 12 292 3894740 3894460 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 blastn 58497 359 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
17996823 17996823 PRJNA1000943_P_NODE_15115_length_243_cov_0.917647_g14977_i0 PRJNA1000943 15115 243 0.917647 2.22988221 Termitidicoccus mucosus 1184151 Bacteria Bacteria 165 2.6999999999999997e-36   NTclustered gi|2724066732|gb|CP109796.1| 1184151 g14977 i0 79.184 26.1646090534979 245 45 99 6 1 242 6569312 6569071 Termitidicoccus mucosus strain TSB47 chromosome, complete genome blastn 6358 165 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Termitidicoccus Termitidicoccus mucosus
17996834 17996834 PRJNA1000943_P_NODE_15735_length_237_cov_2.817073_g15597_i0 PRJNA1000943 15735 237 2.817073 6.67646301 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 366 6.69e-97   NTclustered gi|2874254019|emb|OY970344.1| 412056 g15597 i0 94.561 154.725738396624 239 9 100 4 1 237 737308 737544 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.c.3 genome assembly, chromosome: 1 blastn 36670 366 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
25225387 25225387 PRJNA1000943_P_NODE_9620_length_269_cov_1.260204_g9482_i0 PRJNA1000943 9620 269 1.260204 3.38994876 Pseudomonadati 3379134 Bacteria Bacteria 359 1.3e-94   NTclustered gi|2874254040|emb|OY970364.1| 412056 g9482 i0 90.741 118.234200743494 270 24 100 1 1 269 2168321 2168590 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04463.bin.c.15 genome assembly, chromosome: 1 blastn 31805 359 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;