RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1000943" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1000943 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7376734 7376734 PRJNA1000943_P_NODE_446_length_1048_cov_2.583590_g366_i0 PRJNA1000943 446 1048 2.58359 27.0760232 Geotalea 2910589 Bacteria Bacteria 756 0   NTclustered gi|470481994|ref|NR_076507.1| 351604 g366 i0 80.037 197.93034351145 1067 176 100 31 1 1048 1060 12 Geobacter uraniireducens strain Rf4 23S ribosomal RNA gene, complete sequence blastn 207431 756 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea uraniireducens
12898857 12898857 PRJNA1000943_P_NODE_4991_length_356_cov_1.498233_g4854_i0 PRJNA1000943 4991 356 1.498233 5.33370948 Desulfolutivibrio sulfoxidireducens 2773299 Bacteria Bacteria 58.4 7.24e-4   NTclustered gi|1863429635|gb|CP045508.1| 2773299 g4854 i0 100 0.688202247191011 31 0 9 0 106 136 3214307 3214337 Desulfolutivibrio sulfoxidireducens strain DSM 107105 chromosome, complete genome blastn 245 58.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfolutivibrio Desulfolutivibrio sulfoxidireducens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;