RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1000943" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1000943 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4827282 4827282 PRJNA1000943_P_NODE_2564_length_477_cov_12.571782_g2427_i0 PRJNA1000943 2564 477 12.571782 59.96740014 Metazoa 33208 Nematoda Nematoda 54.7 0.013   NTclustered gi|270309021|dbj|AB500154.1| 6325 g2427 i0 100 0.446540880503145 29 0 6 0 449 477 29 1 Bursaphelenchus mucronatus genes for 26S ribosomal RNA, intergenic spacer with variation 1, 18S ribosomal RNA, partial and complete sequence blastn 213 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus mucronatus
14173807 14173807 PRJNA1000943_P_NODE_6552_length_318_cov_0.987755_g6414_i0 PRJNA1000943 6552 318 0.987755 3.1410609 Strongyloides ratti 34506 Nematoda Nematoda 296 1.25e-75   NTclustered gi|1376154049|ref|XM_024646386.1| 34506 g6414 i0 84.539 26.6069182389937 304 41 95 5 1 301 1028 1328 Strongyloides ratti V-type proton ATPase subunit B, kidney (SRAE_X000121000), partial mRNA blastn 8461 296 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;