RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1000943" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1000943 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1419847 1419847 PRJNA1000943_P_NODE_1782_length_569_cov_2.356855_g1646_i0 PRJNA1000943 1782 569 2.356855 13.41050495 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 54.7 0.016   NTclustered gi|1752368981|ref|XM_030988652.1| 7668 g1646 i0 100 0.0509666080843585 29 0 5 0 162 190 2676 2648 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC100891279 (LOC100891279), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
11623706 11623706 PRJNA1000943_P_NODE_15230_length_242_cov_1.846154_g15092_i0 PRJNA1000943 15230 242 1.846154 4.46769268 Patiria miniata 46514 Echinodermata other_Eukaryota 52.8 0.022   NTclustered gi|1944935230|ref|XM_038223242.1| 46514 g15092 i0 100 0.231404958677686 28 0 12 0 32 59 3062 3035 PREDICTED: Patiria miniata uncharacterized LOC119746350 (LOC119746350), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
21821968 21821968 PRJNA1000943_P_NODE_14698_length_244_cov_0.912281_g14560_i0 PRJNA1000943 14698 244 0.912281 2.22596564 Anneissia japonica 1529436 Echinodermata other_Eukaryota 54.7 0.006   NTclustered gi|1826671125|ref|XM_033267324.1| 1529436 g14560 i0 100 0.463114754098361 29 0 12 0 57 85 391 419 PREDICTED: Anneissia japonica 60S acidic ribosomal protein P2-like (LOC117121922), mRNA blastn 113 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;