RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1000943" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1000943 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9072659 9072659 PRJNA1000943_P_NODE_7628_length_298_cov_1.386667_g7490_i0 PRJNA1000943 7628 298 1.386667 4.13226766 Lytocarpia phyteuma 308672 Cnidaria other_Eukaryota 167 9.48e-37   NTclustered gi|1560754620|gb|MH155638.1| 308672 g7490 i0 78.161 4.70805369127517 261 54 87 3 17 276 259 1 Lytocarpia phyteuma isolate GLO08-028 calmodulin gene, partial cds blastn 1403 167 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Leptothecata Aglaopheniidae Lytocarpia Lytocarpia phyteuma
20546354 20546354 PRJNA1000943_P_NODE_8297_length_287_cov_1.252336_g8159_i0 PRJNA1000943 8297 287 1.252336 3.59420432 Actinia tenebrosa 6105 Cnidaria other_Eukaryota 60.2 1.59e-4   NTclustered gi|1778073361|ref|XM_031718367.1| 6105 g8159 i0 100 0.111498257839721 32 0 11 0 185 216 8564 8533 PREDICTED: Actinia tenebrosa nesprin-1-like (LOC116308019), mRNA blastn 32 60.2 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Actinia Actinia tenebrosa
24370995 24370995 PRJNA1000943_P_NODE_14340_length_245_cov_0.877907_g14202_i0 PRJNA1000943 14340 245 0.877907 2.15087215 Hydractinia symbiolongicarpus 13093 Cnidaria other_Eukaryota 52.8 0.022   NTclustered gi|2519014480|ref|XM_057458632.1| 13093 g14202 i0 96.774 0.63265306122449 31 1 13 0 10 40 498 468 PREDICTED: Hydractinia symbiolongicarpus integumentary mucin C.1-like (LOC130655826), transcript variant X2, mRNA blastn 155 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydractiniidae Hydractinia Hydractinia symbiolongicarpus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;