RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1000943" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1000943 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
145211 145211 PRJNA1000943_P_NODE_5941_length_330_cov_2.789883_g5803_i0 PRJNA1000943 5941 330 2.789883 9.2066139 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 241 6.18e-59   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g5803 i0 80.531 11.9636363636364 339 44 100 20 1 330 273207 273532 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 3948 241 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
5247917 5247917 PRJNA1000943_P_NODE_16065_length_223_cov_4.413333_g15927_i0 PRJNA1000943 16065 223 4.413333 9.84173259 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 278 2.9999999999999995e-70   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g15927 i0 89.238 17.8654708520179 223 22 99 2 2 223 276008 275787 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 3984 278 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
5247954 5247954 PRJNA1000943_P_NODE_4385_length_377_cov_0.934211_g4248_i0 PRJNA1000943 4385 377 0.934211 3.52197547 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 396 1.44e-105   NTclustered gi|2874253835|emb|OY969885.1| 1672391 g4248 i0 86.253 225.724137931034 371 43 98 8 10 377 2092868 2092503 MAG: uncultured Chloroflexia bacterium isolate MFD01275.bin.c.5 genome assembly, chromosome: 1 blastn 85098 396 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
6523538 6523538 PRJNA1000943_P_NODE_7806_length_295_cov_1.405405_g7668_i0 PRJNA1000943 7806 295 1.405405 4.14594475 Phototrophicus methaneseepsis 2710758 Bacteria Bacteria 278 4.15e-70   NTclustered gi|1932369605|gb|CP062983.1| 2710758 g7668 i0 84.429 633.471186440678 289 38 97 6 1 286 2827989 2828273 Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome blastn 186874 278 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae Phototrophicus Phototrophicus methaneseepsis
9072664 9072664 PRJNA1000943_P_NODE_8368_length_286_cov_1.098592_g8230_i0 PRJNA1000943 8368 286 1.098592 3.14197312 Candidatus Promineifilum breve 1806508 Bacteria Bacteria 222 1.9e-53   NTclustered gi|1041165931|emb|LN890655.2| 1806508 g8230 i0 81.164 136.944055944056 292 42 98 9 6 286 598462 598173 Ardenticatena sp. Cfx-K strain Cfx-K genome assembly, chromosome: I blastn 39166 222 1 Bacteria   Bacillati Chloroflexota Ardenticatenia Candidatus Promineifilales Candidatus Promineifilaceae Candidatus Promineifilum Candidatus Promineifilum breve
24371090 24371090 PRJNA1000943_P_NODE_8120_length_290_cov_1.082949_g7982_i0 PRJNA1000943 8120 290 1.082949 3.1405521 Roseiflexus sp. RS-1 357808 Bacteria Bacteria 250 8.87e-62   NTclustered gi|470481958|ref|NR_076505.1| 357808 g7982 i0 82.594 7.37241379310345 293 42 100 9 1 290 1514 1228 Roseiflexus sp. RS-1 strain RS-1 23S ribosomal RNA, complete sequence blastn 2138 250 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Roseiflexaceae Roseiflexus Roseiflexus sp. RS-1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;