contig_metadata
10 rows where analysis = "blastn", bioproject = "PRJNA1000943" and tax_phylum = "Bdellovibrionota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 999280 | 999280 | PRJNA1000943_P_NODE_9001_length_277_cov_1.911765_g8863_i0 | PRJNA1000943 | 9001 | 277 | 1.911765 | 5.29558905 | Pseudobdellovibrio | 2862745 | Bacteria | Bacteria | 178 | 4.029999999999999e-40 | NTclustered | gi|507148233|ref|NR_103040.1| | 453816 | g8863 | i0 | 78.767 | 20.2093862815884 | 292 | 43 | 100 | 10 | 1 | 277 | 1637 | 1350 | Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence | blastn | 5598 | 178 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrio | Pseudobdellovibrio exovorus | ||
| 6102402 | 6102402 | PRJNA1000943_P_NODE_5565_length_340_cov_1.632959_g5427_i0 | PRJNA1000943 | 5565 | 340 | 1.632959 | 5.5520606 | Bdellovibrio | 958 | Bacteria | Bacteria | 316 | 1.0299999999999999e-81 | NTclustered | gi|2800924434|gb|CP168967.1| | 959 | g5427 | i0 | 84.164 | 306.002941176471 | 341 | 39 | 98 | 12 | 1 | 333 | 783093 | 783426 | Bdellovibrio bacteriovorus strain Bd4 chromosome, complete genome | blastn | 104041 | 316 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 7376733 | 7376733 | PRJNA1000943_P_NODE_4066_length_389_cov_1.547468_g3929_i0 | PRJNA1000943 | 4066 | 389 | 1.547468 | 6.01965052 | Bdellovibrio | 958 | Bacteria | Bacteria | 503 | 8.54e-138 | NTclustered | gi|2800924434|gb|CP168967.1| | 959 | g3929 | i0 | 89.899 | 194.52442159383 | 396 | 33 | 100 | 4 | 1 | 389 | 784587 | 784192 | Bdellovibrio bacteriovorus strain Bd4 chromosome, complete genome | blastn | 75670 | 508 | 0.990157480314961 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 11623737 | 11623737 | PRJNA1000943_P_NODE_350_length_1137_cov_5.222744_g288_i0 | PRJNA1000943 | 350 | 1137 | 5.222744 | 59.38259928 | Pseudobdellovibrio sp. HCB154 | 3386277 | Bacteria | Bacteria | 1956 | 0 | NTclustered | gi|2872995934|gb|CP176530.1| | 3386277 | g288 | i0 | 97.715 | 178.018469656992 | 1138 | 24 | 100 | 2 | 1 | 1137 | 699588 | 700724 | Pseudobdellovibrio sp. HCB154 chromosome, complete genome | blastn | 202407 | 1956 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrio | Pseudobdellovibrio sp. HCB154 | ||
| 15027081 | 15027081 | PRJNA1000943_P_NODE_12572_length_249_cov_0.886364_g12434_i0 | PRJNA1000943 | 12572 | 249 | 0.886364 | 2.20704636 | Pseudobdellovibrio | 2862745 | Bacteria | Bacteria | 276 | 1.2299999999999999e-69 | NTclustered | gi|507148233|ref|NR_103040.1| | 453816 | g12434 | i0 | 86.853 | 290.78313253012 | 251 | 28 | 99 | 5 | 1 | 248 | 426 | 178 | Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence | blastn | 72405 | 276 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrio | Pseudobdellovibrio exovorus | ||
| 18850918 | 18850918 | PRJNA1000943_P_NODE_10275_length_261_cov_1.851064_g10137_i0 | PRJNA1000943 | 10275 | 261 | 1.851064 | 4.83127704 | Bacteriovorax | 146784 | Bacteria | Bacteria | 392 | 1.2299999999999999e-104 | NTclustered | gi|1700689994|gb|CP030035.1| | 960 | g10137 | i0 | 93.87 | 397.563218390805 | 261 | 14 | 99 | 2 | 1 | 260 | 1662088 | 1661829 | Bacteriovorax stolpii strain AC01 chromosome, complete genome | blastn | 103764 | 392 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax stolpii | ||
| 18850944 | 18850944 | PRJNA1000943_P_NODE_2275_length_506_cov_12.577367_g2138_i0 | PRJNA1000943 | 2275 | 506 | 12.577367 | 63.64147702 | Bdellovibrio | 958 | Bacteria | Bacteria | 846 | 0 | NTclustered | gi|425858678|gb|CP002930.1| | 1069642 | g2138 | i0 | 96.838 | 127.025691699605 | 506 | 16 | 100 | 0 | 1 | 506 | 842408 | 842913 | Bdellovibrio bacteriovorus str. Tiberius, complete genome | blastn | 64275 | 852 | 0.992957746478873 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 20125763 | 20125763 | PRJNA1000943_P_NODE_1256_length_673_cov_2.016667_g1125_i0 | PRJNA1000943 | 1256 | 673 | 2.016667 | 13.57216891 | Bacteriovorax | 146784 | Bacteria | Bacteria | 845 | 0 | NTclustered | gi|1700689994|gb|CP030035.1| | 960 | g1125 | i0 | 89.365 | 148.364041604755 | 677 | 64 | 100 | 8 | 1 | 673 | 1661033 | 1660361 | Bacteriovorax stolpii strain AC01 chromosome, complete genome | blastn | 99849 | 845 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax stolpii | ||
| 20125811 | 20125811 | PRJNA1000943_P_NODE_956_length_760_cov_7.478894_g830_i0 | PRJNA1000943 | 956 | 760 | 7.478894 | 56.8395944 | Bdellovibrio | 958 | Bacteria | Bacteria | 1315 | 0 | NTclustered | gi|2800917394|gb|CP168972.1| | 959 | g830 | i0 | 97.898 | 127.067105263158 | 761 | 15 | 100 | 1 | 1 | 760 | 749548 | 748788 | Bdellovibrio bacteriovorus strain Bd19 chromosome, complete genome | blastn | 96571 | 1315 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 24371070 | 24371070 | PRJNA1000943_P_NODE_6620_length_316_cov_1.283951_g6482_i0 | PRJNA1000943 | 6620 | 316 | 1.283951 | 4.05728516 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 254 | 7.560000000000001e-63 | NTclustered | gi|2893356065|emb|OZ220488.1| | 2053517 | g6482 | i0 | 87.111 | 153.509493670886 | 225 | 27 | 71 | 2 | 81 | 304 | 730038 | 730261 | MAG: Bdellovibrionales bacterium isolate 0d1acec5-ee6a-42a0-9e8e-8bc2840f726d genome assembly, chromosome: 1 | blastn | 48509 | 254 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;