RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1000943" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1000943 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15447831 15447831 PRJNA1000943_P_NODE_15553_length_242_cov_0.923077_g15415_i0 PRJNA1000943 15553 242 0.923077 2.23384634 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 235 2.02e-57   NTclustered gi|2076447151|gb|CP075366.1| 2682144 g15415 i0 84.454 36.0743801652893 238 37 98 0 1 238 259507 259270 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM8 chromosome blastn 8730 235 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
19270632 19270632 PRJNA1000943_P_NODE_10396_length_260_cov_1.251337_g10258_i0 PRJNA1000943 10396 260 1.251337 3.2534762 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 303 5.92e-78   NTclustered gi|2076447151|gb|CP075366.1| 2682144 g10258 i0 87.833 13.4538461538462 263 26 100 6 1 260 894367 894626 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM8 chromosome blastn 3498 303 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
19270699 19270699 PRJNA1000943_P_NODE_1936_length_546_cov_1.484144_g1800_i0 PRJNA1000943 1936 546 1.484144 8.10342624 Armatimonadetes bacterium Uphvl-Ar2 2004468 Bacteria Bacteria 710 0   NTclustered gi|1199101103|gb|CP021424.1| 2004468 g1800 i0 90.128 686.910256410256 547 52 100 2 1 546 2201939 2201394 Armatimonadetes bacterium Uphvl-Ar2 genome blastn 375053 710 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium Uphvl-Ar2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;