RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1000943" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA1000943 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12898780 12898780 PRJNA1000943_P_NODE_13531_length_247_cov_0.896552_g13393_i0 PRJNA1000943 13531 247 0.896552 2.21448344 Leptotrichia hongkongensis 554406 Bacteria Bacteria 451 1.88e-122   NTclustered gi|1708587163|dbj|AP019846.1| 554406 g13393 i0 99.595 14.5141700404858 247 1 100 0 1 247 2037977 2037731 Leptotrichia hongkongensis JMUB5056 DNA, complete genome blastn 3585 451 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hongkongensis
14173822 14173822 PRJNA1000943_P_NODE_7852_length_294_cov_1.900452_g7714_i0 PRJNA1000943 7852 294 1.900452 5.58732888 Leptotrichia sp. SK-5 3075818 Bacteria Bacteria 52.8 0.027   NTclustered gi|2899356158|dbj|AP028931.1| 3075818 g7714 i0 94.118 0.115646258503401 34 2 12 0 236 269 1247371 1247404 Leptotrichia sp. SK-5 DNA, complete genome blastn 34 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. SK-5
21401406 21401406 PRJNA1000943_P_NODE_9337_length_272_cov_2.125628_g9199_i0 PRJNA1000943 9337 272 2.125628 5.78170816 Fusobacterium 848 Bacteria Bacteria 497 2.67e-136   NTclustered gi|1370537877|gb|CP028108.1| 860 g9199 i0 99.632 489.018382352941 272 1 100 0 1 272 462772 463043 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 133013 497 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
23097353 23097353 PRJNA1000943_P_NODE_6419_length_320_cov_2.263158_g6281_i0 PRJNA1000943 6419 320 2.263158 7.2421056 Cetobacterium somerae 188913 Bacteria Bacteria 569 6.699999999999998e-158   NTclustered gi|2666488225|gb|CP143319.1| 188913 g6281 i0 98.75 428.58125 320 4 100 0 1 320 1318650 1318969 Cetobacterium somerae strain ceto chromosome, complete genome blastn 137146 569 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;