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contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA1000943" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 17 ✖

bioproject 1

  • PRJNA1000943 · 17 ✖

analysis 1

  • blastn · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
145134 145134 PRJNA1000943_P_NODE_13301_length_247_cov_0.896552_g13163_i0 PRJNA1000943 13301 247 0.896552 2.21448344 Coccomyxa subellipsoidea 248742 Plants Plants 198 2.71e-46   NTclustered gi|545372299|ref|XM_005650575.1| 574566 g13163 i0 86.022 126.821862348178 186 24 75 2 63 247 235 51 Coccomyxa subellipsoidea C-169 hexaubiquitin protein partial mRNA blastn 31325 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
2274394 2274394 PRJNA1000943_P_NODE_7102_length_307_cov_1.333333_g6964_i0 PRJNA1000943 7102 307 1.333333 4.09333231 Eukaryota 2759 Plants Plants 285 2.5899999999999997e-72   NTclustered gi|119416491|emb|AJ870436.1| 37502 g6964 i0 83.548 99.6026058631922 310 45 100 4 1 307 386 692 Polytomella sp. Pringsheim 198.80 mRNA for ATP synthase beta chain, mitochondrial precursor (atp2 gene) blastn 30578 285 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
3971443 3971443 PRJNA1000943_P_NODE_2764_length_462_cov_1.403599_g2627_i0 PRJNA1000943 2764 462 1.403599 6.48462738 Monoraphidium neglectum 145388 Plants Plants 278 6.8e-70   NTclustered gi|926795717|ref|XM_014050538.1| 145388 g2627 i0 83.333 59.6623376623377 300 50 65 0 83 382 61 360 Monoraphidium neglectum 40S ribosomal protein S20-1 mRNA blastn 27564 278 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
6523510 6523510 PRJNA1000943_P_NODE_5626_length_338_cov_1.758491_g5488_i0 PRJNA1000943 5626 338 1.758491 5.94369958 Chlamydomonas incerta 51695 Plants Plants 296 1.34e-75   NTclustered gi|74272606|gb|DQ122868.1| 51695 g5488 i0 84.437 87.9940828402367 302 45 89 2 38 338 34 334 Chlamydomonas incerta 40S ribosomal protein S3 mRNA, complete cds blastn 29742 296 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
8652386 8652386 PRJNA1000943_P_NODE_4267_length_381_cov_1.266234_g4130_i0 PRJNA1000943 4267 381 1.266234 4.82435154 Eukaryota 2759 Plants Plants 346 1.49e-90   NTclustered gi|926791444|ref|XM_014048742.1| 145388 g4130 i0 83.827 101.548556430446 371 53 97 6 13 381 2993 2628 Monoraphidium neglectum adenosylhomocysteinase mRNA blastn 38690 346 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
9927236 9927236 PRJNA1000943_P_NODE_1748_length_574_cov_13.922156_g1612_i0 PRJNA1000943 1748 574 13.922156 79.91317544 Chlamydomonadales 3042 Plants Plants 148 7.019999999999999e-31   NTclustered gi|15281670|gb|AF395510.1| 77548 g1612 i0 76.923 34.787456445993 273 56 47 7 1 272 1191 1457 Pteromonas angulosa strain SAG 64-3 voucher SAG:64-3 26S ribosomal RNA gene, partial sequence blastn 19968 148 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Phacotaceae Pteromonas Pteromonas angulosa
10348213 10348213 PRJNA1000943_P_NODE_12849_length_248_cov_1.337143_g12711_i0 PRJNA1000943 12849 248 1.337143 3.31611464 Coccomyxa subellipsoidea 248742 Plants Plants 189 1.6399999999999996e-43   NTclustered gi|545365041|ref|XM_005647468.1| 574566 g12711 i0 83.333 74.008064516129 204 34 82 0 25 228 347 144 Coccomyxa subellipsoidea C-169 ribosomal protein L10e partial mRNA blastn 18354 189 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
11623681 11623681 PRJNA1000943_P_NODE_13110_length_248_cov_0.891429_g12972_i0 PRJNA1000943 13110 248 0.891429 2.21074392 Chlamydomonas reinhardtii 3055 Plants Plants 244 3.45e-60   NTclustered gi|2082259086|ref|XM_001697336.2| 3055 g12972 i0 84.615 56.8387096774194 247 36 99 2 1 246 436 191 Chlamydomonas reinhardtii ribosomal protein S14 (CHLRE_11g480150v5), mRNA blastn 14096 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17996815 17996815 PRJNA1000943_P_NODE_14375_length_244_cov_2.076023_g14237_i0 PRJNA1000943 14375 244 2.076023 5.06549612 Monoraphidium neglectum 145388 Plants Plants 148 2.7299999999999997e-31   NTclustered gi|926774123|ref|XM_014040082.1| 145388 g14237 i0 81.768 15.077868852459 181 29 73 4 29 207 389 211 Monoraphidium neglectum 40S ribosomal protein S13-2 mRNA blastn 3679 148 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
17996900 17996900 PRJNA1000943_P_NODE_7915_length_293_cov_1.572727_g7777_i0 PRJNA1000943 7915 293 1.572727 4.60809011 Pseudendoclonium arthopyreniae 926286 Plants Plants 305 1.89e-78   NTclustered gi|312165803|gb|HM068616.1| 926286 g7777 i0 98.83 100.058020477816 171 2 58 0 32 202 171 1 Pseudendoclonium arthopyreniae strain SAG 467-2 23S ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 29317 305 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Kornmanniaceae Pseudendoclonium Pseudendoclonium arthopyreniae
19270673 19270673 PRJNA1000943_P_NODE_14036_length_245_cov_0.906977_g13898_i0 PRJNA1000943 14036 245 0.906977 2.22209365 Chlorella variabilis 554065 Plants Plants 237 5.69e-58   NTclustered gi|552834449|ref|XM_005848670.1| 554065 g13898 i0 85.526 60.469387755102 228 31 93 2 3 229 740 514 Chlorella variabilis hypothetical protein (CHLNCDRAFT_57527) mRNA, complete cds blastn 14815 237 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
19270711 19270711 PRJNA1000943_P_NODE_3176_length_434_cov_3.554017_g3039_i0 PRJNA1000943 3176 434 3.554017 15.42443378 Acrosiphonia sp. SAG 127.80 2601987 Plants Plants 477 5.8299999999999985e-130   NTclustered gi|290770762|emb|FN563074.1| 2601987 g3039 i0 86.775 119.960829493088 431 53 99 4 1 430 3149 3576 Acrosiphonia sp. SAG-127.80 plastid 16S rRNA gene (partial), ITS1 and 23S rRNA gene (partial), strain SAG 127.80 blastn 52063 477 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Ulotrichaceae Acrosiphonia Acrosiphonia sp. SAG 127.80
20546302 20546302 PRJNA1000943_P_NODE_2757_length_462_cov_2.354756_g2620_i0 PRJNA1000943 2757 462 2.354756 10.87897272 Chlorella variabilis 554065 Plants Plants 228 6.939999999999998e-55   NTclustered gi|552840730|ref|XM_005850063.1| 554065 g2620 i0 79.154 19.4588744588745 331 67 71 2 131 460 468 139 Chlorella variabilis 40S ribosomal protein S18 (CHLNCDRAFT_34417) mRNA, complete cds blastn 8990 228 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
21821934 21821934 PRJNA1000943_P_NODE_12038_length_250_cov_2.350282_g11900_i0 PRJNA1000943 12038 250 2.350282 5.875705 Hazenia capsulata 2202518 Plants Plants 316 7.269999999999998e-82   NTclustered gi|17028245|gb|L42837.1|CMKCPRGOL 2202518 g11900 i0 89.641 123.272 251 23 100 3 1 250 592 840 Hazenia capsulata large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 30818 316 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Hazeniaceae Hazenia Hazenia capsulata
22676095 22676095 PRJNA1000943_P_NODE_12058_length_250_cov_1.762712_g11920_i0 PRJNA1000943 12058 250 1.762712 4.40678 Eukaryota 2759 Plants Plants 165 2.79e-36   NTclustered gi|1861355669|gb|MT377085.1| 51329 g11920 i0 86.184 64.376 152 21 61 0 5 156 1835 1684 Polytomella parva clone 0016338189 heat shock protein 90c (HS90) mRNA, complete cds; plastid blastn 16094 165 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella parva
24371072 24371072 PRJNA1000943_P_NODE_6780_length_312_cov_3.259414_g6642_i0 PRJNA1000943 6780 312 3.259414 10.16937168 Pseudendoclonium arthopyreniae 926286 Plants Plants 492 1.45e-134   NTclustered gi|312165803|gb|HM068616.1| 926286 g6642 i0 95.192 7.94871794871795 312 13 99 2 2 312 502 192 Pseudendoclonium arthopyreniae strain SAG 467-2 23S ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 2480 492 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Kornmanniaceae Pseudendoclonium Pseudendoclonium arthopyreniae
24371079 24371079 PRJNA1000943_P_NODE_7340_length_303_cov_1.356522_g7202_i0 PRJNA1000943 7340 303 1.356522 4.11026166 Chlamydomonas reinhardtii 3055 Plants Plants 248 3.3499999999999995e-61   NTclustered gi|2082261495|ref|XM_001692933.2| 3055 g7202 i0 85.477 57.9009900990099 241 31 79 4 38 276 691 929 Chlamydomonas reinhardtii ribosomal protein L8 (CHLRE_12g535851v5), mRNA blastn 17544 248 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;