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contig_metadata

33 rows where analysis = "blastn", bioproject = "PRJNA1000943" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 33 ✖

bioproject 1

  • PRJNA1000943 · 33 ✖

analysis 1

  • blastn · 33 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
999277 999277 PRJNA1000943_P_NODE_8321_length_286_cov_2.863850_g8183_i0 PRJNA1000943 8321 286 2.86385 8.190611 Acanthamoeba 5754 Discosea other_Eukaryota 119 2.57e-22   NTclustered gi|155620|gb|M93361.1|ACAACTPH 5755 g8183 i0 83.594 0.895104895104895 128 19 44 2 22 148 391 265 Acanthamoeba castellanii actophorin mRNA, complete cds blastn 256 119 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1419783 1419783 PRJNA1000943_P_NODE_10782_length_255_cov_2.247253_g10644_i0 PRJNA1000943 10782 255 2.247253 5.73049515 Ripella tribonemae 2047823 Discosea other_Eukaryota 156 1.72e-33   NTclustered gi|1269228457|gb|MF683582.1| 2047823 g10644 i0 87.591 50.9333333333333 137 13 53 4 68 201 1364 1229 Ripella tribonemae clone 70.1.17 18S ribosomal RNA gene, partial sequence blastn 12988 156 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella tribonemae
1419827 1419827 PRJNA1000943_P_NODE_14882_length_243_cov_0.917647_g14744_i0 PRJNA1000943 14882 243 0.917647 2.22988221 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 438 1.4399999999999996e-118   NTclustered gi|365928255|gb|JN825705.1| 590481 g14744 i0 99.585 86.2592592592593 241 0 99 1 4 243 1039 799 Uncultured Amoebozoa clone Alchichica_AQ2b_5E_39 small subunit ribosomal RNA gene, partial sequence blastn 20961 438 1 Eukaryota Amoebozoa             uncultured Amoebozoa
1419865 1419865 PRJNA1000943_P_NODE_3222_length_431_cov_1.865922_g3085_i0 PRJNA1000943 3222 431 1.865922 8.04212382 Dictyostelium discoideum 44689 Evosea other_Eukaryota 508 2.05e-139   NTclustered gi|66821326|ref|XM_639065.1| 352472 g3085 i0 87.935 98.07656612529 431 52 100 0 1 431 1006 576 Dictyostelium discoideum AX4 hypothetical protein (act13) mRNA, complete cds blastn 42271 508 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
3971429 3971429 PRJNA1000943_P_NODE_15944_length_229_cov_2.397436_g15806_i0 PRJNA1000943 15944 229 2.397436 5.49012844 Cochliopodium minus 313997 Discosea other_Eukaryota 287 5.14e-73   NTclustered gi|330902862|gb|JF298257.1| 313997 g15806 i0 88.983 47.5152838427948 236 17 100 9 1 229 1177 1410 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 10881 287 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
3971447 3971447 PRJNA1000943_P_NODE_2984_length_447_cov_4.558824_g2847_i0 PRJNA1000943 2984 447 4.558824 20.37794328 Ripella sp. 805 1217113 Discosea other_Eukaryota 715 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g2847 i0 95.759 101.485458612975 448 11 100 6 1 447 987 547 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 45364 715 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
3971488 3971488 PRJNA1000943_P_NODE_7524_length_300_cov_1.325991_g7386_i0 PRJNA1000943 7524 300 1.325991 3.977973 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 486 6.459999999999999e-133   NTclustered gi|421976355|gb|JQ519494.1| 5778 g7386 i0 95.987 0.996666666666667 299 12 99 0 2 300 517 219 Vermamoeba vermiformis clone JG10.150_g4 elongation factor 2 alpha gene, partial cds blastn 299 486 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5247851 5247851 PRJNA1000943_P_NODE_10305_length_261_cov_1.425532_g10167_i0 PRJNA1000943 10305 261 1.425532 3.72063852 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 213 1.03e-50   NTclustered gi|61968712|gb|AY803788.1| 5778 g10167 i0 87.302 2.17241379310345 189 21 72 2 73 261 927 742 Hartmannella vermiformis vacuolar protein sorting protein 35-3 (VPS35-3) gene, partial cds blastn 567 213 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5247987 5247987 PRJNA1000943_P_NODE_7365_length_302_cov_4.244541_g7227_i0 PRJNA1000943 7365 302 4.244541 12.81851382 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 531 2.9599999999999993e-146   NTclustered gi|909719645|gb|KT185625.1| 5778 g7227 i0 98.344 20.450331125827802 302 5 100 0 1 302 7085 6784 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 6176 531 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6523481 6523481 PRJNA1000943_P_NODE_2726_length_465_cov_1.872449_g2589_i0 PRJNA1000943 2726 465 1.872449 8.70688785 Entamoeba histolytica 5759 Evosea other_Eukaryota 287 1.14e-72   NTclustered gi|183234457|ref|XM_645739.2| 294381 g2589 i0 79.481 30.8322580645161 424 71 89 14 46 461 3 418 Entamoeba histolytica HM-1:IMSS Rho family GTPase (EHI_197840), mRNA blastn 14337 287 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
6523524 6523524 PRJNA1000943_P_NODE_6566_length_317_cov_1.762295_g6428_i0 PRJNA1000943 6566 317 1.762295 5.58647515 Dictyostelium purpureum 5786 Evosea other_Eukaryota 268 2.7099999999999998e-67   NTclustered gi|330842214|ref|XM_003293030.1| 5786 g6428 i0 86.056 48.3186119873817 251 33 79 2 53 302 395 146 Dictyostelium purpureum uncharacterized protein (rac1A), mRNA blastn 15317 268 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
6523543 6523543 PRJNA1000943_P_NODE_8346_length_286_cov_1.464789_g8208_i0 PRJNA1000943 8346 286 1.464789 4.18929654 Ripella tribonemae 2047823 Discosea other_Eukaryota 204 6.899999999999999e-48   NTclustered gi|1269228466|gb|MF683591.1| 2047823 g8208 i0 84.615 66.2342657342657 208 28 73 4 69 276 892 689 Ripella tribonemae clone 22.1.8 18S ribosomal RNA gene, partial sequence blastn 18943 204 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella tribonemae
7376724 7376724 PRJNA1000943_P_NODE_1646_length_591_cov_1.959459_g1510_i0 PRJNA1000943 1646 591 1.959459 11.58040269 Vannellidae 95227 Discosea other_Eukaryota 928 0   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g1510 i0 95.118 100.639593908629 594 20 100 8 1 591 1094 1681 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 59478 929 0.998923573735199 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
9072640 9072640 PRJNA1000943_P_NODE_6108_length_327_cov_1.200787_g5970_i0 PRJNA1000943 6108 327 1.200787 3.92657349 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 344 4.53e-90   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g5970 i0 85.671 42.2782874617737 328 45 100 2 1 327 1592 1266 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 13825 344 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10348247 10348247 PRJNA1000943_P_NODE_15169_length_243_cov_0.917647_g15031_i0 PRJNA1000943 15169 243 0.917647 2.22988221 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 377 3.18e-100   NTclustered gi|423292048|gb|JQ519470.1| 5778 g15031 i0 94.65 79.1028806584362 243 13 100 0 1 243 153 395 Vermamoeba vermiformis clone JG10.132_b5 alpha tubulin gene, partial cds blastn 19222 377 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10348307 10348307 PRJNA1000943_P_NODE_5769_length_334_cov_2.835249_g5631_i0 PRJNA1000943 5769 334 2.835249 9.46973166 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 573 5.43e-159   NTclustered gi|300078496|gb|GU001158.1| 5778 g5631 i0 97.605 13.7784431137725 334 8 100 0 1 334 1631 1298 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4602 573 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11623685 11623685 PRJNA1000943_P_NODE_13490_length_247_cov_0.896552_g13352_i0 PRJNA1000943 13490 247 0.896552 2.21448344 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 58.4 4.8e-4   NTclustered gi|470492282|ref|XM_004345943.1| 1257118 g13352 i0 100 0.238866396761134 31 0 13 0 151 181 691 721 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_183950), partial mRNA blastn 59 58.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11623766 11623766 PRJNA1000943_P_NODE_6490_length_319_cov_1.130081_g6352_i0 PRJNA1000943 6490 319 1.130081 3.60495839 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 95.3 4.9e-15   NTclustered gi|470384599|ref|XM_004334016.1| 1257118 g6352 i0 86.905 0.382445141065831 84 11 26 0 4 87 720 803 Acanthamoeba castellanii str. Neff Fibrillarin, putative (ACA1_025690), partial mRNA blastn 122 95.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13752682 13752682 PRJNA1000943_P_NODE_1011_length_741_cov_4.384731_g885_i0 PRJNA1000943 1011 741 4.384731 32.49085671 Vermamoeba 1260114 Tubulinea other_Eukaryota 1321 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g885 i0 98.919 95.9217273954116 740 7 99 1 1 739 4889 5628 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 71078 1321 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13752712 13752712 PRJNA1000943_P_NODE_1911_length_548_cov_4.235789_g1775_i0 PRJNA1000943 1911 548 4.235789 23.21212372 Ripella 1217112 Discosea other_Eukaryota 870 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g1775 i0 95.764 99.8065693430657 543 18 99 5 9 548 1 541 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 54694 870 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
15447824 15447824 PRJNA1000943_P_NODE_1513_length_619_cov_2.115385_g1378_i0 PRJNA1000943 1513 619 2.115385 13.09423315 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 420 1.4599999999999998e-112   NTclustered gi|470437282|ref|XM_004338924.1| 1257118 g1378 i0 80 91.4168012924071 585 103 93 13 6 583 620 43 Acanthamoeba castellanii str. Neff adenine nucleotide translocator, putative (ACA1_128450), partial mRNA blastn 56587 420 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16722000 16722000 PRJNA1000943_P_NODE_1714_length_579_cov_3.233202_g1578_i0 PRJNA1000943 1714 579 3.233202 18.72023958 Acytostelium subglobosum 361139 Evosea other_Eukaryota 320 1.4199999999999995e-82   NTclustered gi|831754130|ref|XM_012892568.1| 1410327 g1578 i0 81.89 49.1778929188256 381 67 66 2 135 514 62 441 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 28474 320 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
17577128 17577128 PRJNA1000943_P_NODE_7634_length_298_cov_1.315556_g7496_i0 PRJNA1000943 7634 298 1.315556 3.92035688 Dictyostelium 5782 Evosea other_Eukaryota 222 1.99e-53   NTclustered gi|414966|gb|U02926.1|DDU02926 44689 g7496 i0 81.227 13.6073825503356 277 50 93 2 23 298 333 58 Dictyostelium discoideum Ax3 Rab2 mRNA, partial cds blastn 4055 222 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
17996863 17996863 PRJNA1000943_P_NODE_4715_length_365_cov_2.369863_g4578_i0 PRJNA1000943 4715 365 2.369863 8.64999995 Dictyostelium discoideum 44689 Evosea other_Eukaryota 235 3.1999999999999995e-57   NTclustered gi|66806816|ref|XM_632039.1| 352472 g4578 i0 87.037 17.4821917808219 216 19 58 5 154 365 45 255 Dictyostelium discoideum AX4 hypothetical protein (rbx1) mRNA, complete cds blastn 6381 235 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
17996872 17996872 PRJNA1000943_P_NODE_5495_length_342_cov_1.148699_g5357_i0 PRJNA1000943 5495 342 1.148699 3.92855058 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 472 2.09e-128   NTclustered gi|89357437|gb|DQ407656.1| 5778 g5357 i0 91.52 2 342 29 100 0 1 342 69 410 Hartmannella vermiformis chitinase-like protein cluster A mRNA, partial cds blastn 684 472 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19270691 19270691 PRJNA1000943_P_NODE_15936_length_229_cov_3.000000_g15798_i0 PRJNA1000943 15936 229 3 6.87 Cribraria violacea 1334538 Evosea other_Eukaryota 211 3.19e-50   NTclustered gi|501417113|gb|JX481322.1| 1334538 g15798 i0 84.071 24.3100436681223 226 28 97 7 8 229 763 542 Cribraria violacea voucher AMFD172 elongation factor 1A (EF1A) gene, partial cds blastn 5567 211 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Liceales Cribrariaceae Cribraria Cribraria violacea
19270734 19270734 PRJNA1000943_P_NODE_5016_length_355_cov_2.812057_g4879_i0 PRJNA1000943 5016 355 2.812057 9.98280235 Cochliopodium minus 313997 Discosea other_Eukaryota 486 7.77e-133   NTclustered gi|330902862|gb|JF298257.1| 313997 g4879 i0 99.624 59.8028169014084 266 1 75 0 29 294 252 517 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 21230 486 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
20125803 20125803 PRJNA1000943_P_NODE_6836_length_311_cov_3.441176_g6698_i0 PRJNA1000943 6836 311 3.441176 10.70205736 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 558 1.3999999999999997e-154   NTclustered gi|909719645|gb|KT185625.1| 5778 g6698 i0 99.035 58.7942122186495 311 3 100 0 1 311 3879 3569 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 18285 558 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21821957 21821957 PRJNA1000943_P_NODE_13558_length_246_cov_2.763006_g13420_i0 PRJNA1000943 13558 246 2.763006 6.79699476 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 377 3.2300000000000003e-100   NTclustered gi|62910949|gb|AY925001.1| 5778 g13420 i0 94.309 7.36178861788618 246 14 100 0 1 246 394 639 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 1811 377 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21821976 21821976 PRJNA1000943_P_NODE_15638_length_240_cov_6.958084_g15500_i0 PRJNA1000943 15638 240 6.958084 16.6994016 Cochliopodium minus 313997 Discosea other_Eukaryota 333 6.88e-87   NTclustered gi|330902862|gb|JF298257.1| 313997 g15500 i0 94.495 10.1916666666667 218 8 90 4 3 219 218 4 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 2446 333 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
23097355 23097355 PRJNA1000943_P_NODE_6599_length_316_cov_5.687243_g6461_i0 PRJNA1000943 6599 316 5.687243 17.97168788 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 579 1.0999999999999999e-160   NTclustered gi|300078496|gb|GU001158.1| 5778 g6461 i0 99.684 47.7721518987342 316 1 100 0 1 316 3436 3751 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15096 579 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24371039 24371039 PRJNA1000943_P_NODE_4580_length_370_cov_1.447811_g4443_i0 PRJNA1000943 4580 370 1.447811 5.3569007 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 291 6.8499999999999996e-74   NTclustered gi|221185864|gb|FJ577811.1| 590481 g4443 i0 84.95 44.8513513513514 299 32 79 9 78 370 661 952 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 16595 291 1 Eukaryota Amoebozoa             uncultured Amoebozoa
24371056 24371056 PRJNA1000943_P_NODE_5280_length_348_cov_1.181818_g5142_i0 PRJNA1000943 5280 348 1.181818 4.11272664 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 505 2.1e-138   NTclustered gi|146335208|gb|EF216680.1| 5778 g5142 i0 92.816 1.19827586206897 348 25 100 0 1 348 1138 1485 Hartmannella vermiformis transketolase mRNA, complete cds blastn 417 505 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;