RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB9859" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB9859 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6102184 6102184 PRJEB9859_P_NODE_585_length_456_cov_11.302108_g558_i0 PRJEB9859 585 456 11.302108 51.53761248 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 316 1.4199999999999999e-81   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g558 i0 95.455 49.4122807017544 198 9 43 0 237 434 3082 2885 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 22532 316 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
6523300 6523300 PRJEB9859_P_NODE_646_length_445_cov_5.009615_g616_i0 PRJEB9859 646 445 5.009615 22.29278675 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 326 2.3e-84   NTclustered gi|300676719|gb|GQ377693.1| 151077 g616 i0 88.722 2.46966292134831 266 30 60 0 1 266 274 539 Chilodonella uncinata gcr5-like mRNA, partial sequence blastn 1099 326 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
12898554 12898554 PRJEB9859_P_NODE_1051_length_388_cov_27.860724_g1017_i0 PRJEB9859 1051 388 27.860724 108.09960912 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 206 2.6899999999999998e-48   NTclustered gi|110645063|gb|DQ665311.1| 151077 g1017 i0 80 58.8221649484536 285 51 73 5 1 282 924 1205 Chilodonella uncinata clone 1 elongation factor 1-alpha (EF-1alpha) gene, partial cds; macronuclear blastn 22823 206 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
21821731 21821731 PRJEB9859_P_NODE_1378_length_359_cov_4.660606_g1343_i0 PRJEB9859 1378 359 4.660606 16.73157554 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 207 6.86e-49   NTclustered gi|300676714|gb|GQ377691.1| 151077 g1343 i0 80.899 6.25348189415042 267 47 74 4 71 335 415 151 Chilodonella uncinata rps22a (rps22a) mRNA, complete cds blastn 2245 207 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;