RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB9859" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB9859 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10348014 10348014 PRJEB9859_P_NODE_3169_length_276_cov_454.514170_g3134_i0 PRJEB9859 3169 276 454.51417 1254.4591092 Phlyctochytrium planicorne 261098 Fungi Fungi 183 8.629999999999998e-42   NTclustered gi|82398549|gb|DQ273813.1| 261098 g3134 i0 83.756 71.5253623188406 197 28 71 4 82 276 1536 1342 Phlyctochytrium planicorne isolate AFTOL-ID 628 28S ribosomal RNA gene, partial sequence blastn 19741 183 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium planicorne
10348080 10348080 PRJEB9859_P_NODE_7669_length_209_cov_622.127778_g7634_i0 PRJEB9859 7669 209 622.127778 1300.24705602 Phlyctochytrium planicorne 261098 Fungi Fungi 183 6.229999999999998e-42   NTclustered gi|82398549|gb|DQ273813.1| 261098 g7634 i0 83.756 94.4258373205742 197 28 93 4 15 209 1536 1342 Phlyctochytrium planicorne isolate AFTOL-ID 628 28S ribosomal RNA gene, partial sequence blastn 19735 183 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium planicorne
21821831 21821831 PRJEB9859_P_NODE_7618_length_210_cov_618.729282_g7583_i0 PRJEB9859 7618 210 618.729282 1299.3314922 Phlyctochytrium planicorne 261098 Fungi Fungi 183 6.259999999999998e-42   NTclustered gi|82398549|gb|DQ273813.1| 261098 g7583 i0 83.756 93.9714285714286 197 28 93 4 1 195 1342 1536 Phlyctochytrium planicorne isolate AFTOL-ID 628 28S ribosomal RNA gene, partial sequence blastn 19734 183 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium planicorne

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;