RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB9859" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB9859 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10347977 10347977 PRJEB9859_P_NODE_1609_length_342_cov_8.041534_g1574_i0 PRJEB9859 1609 342 8.041534 27.50204628 Cryptosporidium ubiquitum 857276 SAR_Eukaryotes SAR_Eukaryotes 108 6.8e-19   NTclustered gi|1624734488|ref|XM_029018197.1| 857276 g1574 i0 87.234 0.274853801169591 94 12 27 0 185 278 427 334 Cryptosporidium ubiquitum 60s ribosomal protein L19 (cubi_01185), partial mRNA blastn 94 108 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium ubiquitum
13752480 13752480 PRJEB9859_P_NODE_5751_length_241_cov_1.047170_g5716_i0 PRJEB9859 5751 241 1.04717 2.5236797 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 67.6 7.75e-7   NTclustered gi|2785766922|ref|XM_067218611.1| 5824 g5716 i0 81.707 0.680497925311203 82 13 34 2 8 88 853 933 Plasmodium brasilianum ATP synthase subunit gamma (MKS88_005356), partial mRNA blastn 164 67.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
24370796 24370796 PRJEB9859_P_NODE_2240_length_309_cov_3.310714_g2205_i0 PRJEB9859 2240 309 3.310714 10.23010626 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 174 5.9e-39   NTclustered gi|401402052|ref|XM_003881109.1| 572307 g2205 i0 81.517 29.631067961165 211 39 68 0 1 211 169 379 Neospora caninum Liverpool putative ubiquitin / ribosomal protein CEP52 fusion protein (NCLIV_042000), partial mRNA blastn 9156 174 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;