RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB9859" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 7 ✖

bioproject 1

  • PRJEB9859 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3971275 3971275 PRJEB9859_P_NODE_7544_length_212_cov_3.939891_g7509_i0 PRJEB9859 7544 212 3.939891 8.35256892 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 119 1.81e-22   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g7509 i0 93.75 1.44339622641509 80 4 37 1 67 145 116 37 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 306 119 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
7797465 7797465 PRJEB9859_P_NODE_5487_length_242_cov_2.530516_g5452_i0 PRJEB9859 5487 242 2.530516 6.12384872 Patescibacteria group bacterium 2052139 Bacteria Bacteria 93.5 1.28e-14   NTclustered gi|2621785934|emb|OY782392.1| 2052139 g5452 i0 81.197 0.483471074380165 117 21 48 1 26 142 612221 612336 MAG: Patescibacteria group bacterium isolate 573f42cd-6ce4-4b95-a45b-0ed028197a55 genome assembly, chromosome: 1 blastn 117 93.5 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
10347986 10347986 PRJEB9859_P_NODE_2109_length_315_cov_1.489510_g2074_i0 PRJEB9859 2109 315 1.48951 4.6919565 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 206 2.1399999999999994e-48   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g2074 i0 81.154 1.59365079365079 260 46 82 3 34 291 859739 859481 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 502 206 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
15447615 15447615 PRJEB9859_P_NODE_1393_length_358_cov_5.826748_g1358_i0 PRJEB9859 1393 358 5.826748 20.85975784 candidate division SR1 bacterium RAAC1_SR1_1 1394709 Bacteria Bacteria 95.3 5.55e-15   NTclustered gi|563351663|gb|CP006913.1| 1394709 g1358 i0 80.292 1.10335195530726 137 18 37 9 170 300 125042 125175 Candidate division SR1 bacterium RAAC1_SR1_1 chromosome, complete genome blastn 395 95.3 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium RAAC1_SR1_1
19270448 19270448 PRJEB9859_P_NODE_1336_length_362_cov_255.702703_g1301_i0 PRJEB9859 1336 362 255.702703 925.64378486 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 298 3.99e-76   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g1301 i0 88.889 56.5165745856354 252 15 69 8 83 332 813797 814037 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 20459 298 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
19270452 19270452 PRJEB9859_P_NODE_1496_length_350_cov_264.825545_g1461_i0 PRJEB9859 1496 350 264.825545 926.8894075 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 298 3.85e-76   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g1461 i0 88.889 58.4542857142857 252 15 71 8 71 320 813797 814037 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 20459 298 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
21821774 21821774 PRJEB9859_P_NODE_318_length_561_cov_5.930451_g298_i0 PRJEB9859 318 561 5.930451 33.26983011 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 228 8.559999999999998e-55   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g298 i0 78.32 34.6274509803922 369 69 65 9 32 396 988489 988850 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 19426 228 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;