RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB9859" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJEB9859 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9072439 9072439 PRJEB9859_P_NODE_8_length_1245_cov_64.805099_g6_i0 PRJEB9859 8 1245 64.805099 806.82348255 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 1271 0   NTclustered gi|221185864|gb|FJ577811.1| 590481 g6 i0 89.852 31.374297188755 1015 67 86 25 112 1094 1 1011 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 39061 1271 1 Eukaryota Amoebozoa             uncultured Amoebozoa
15447654 15447654 PRJEB9859_P_NODE_3813_length_259_cov_511.808696_g3778_i0 PRJEB9859 3813 259 511.808696 1325.58452264 Phalansterium filosum 857046 Evosea other_Eukaryota 233 7.85e-57   NTclustered gi|300078501|gb|GU001163.1| 857046 g3778 i0 85.586 86.7992277992278 222 32 86 0 15 236 2344 2123 Phalansterium sp. EEG-2010/THA 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 22481 233 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium filosum
21401094 21401094 PRJEB9859_P_NODE_1017_length_391_cov_5.502762_g983_i0 PRJEB9859 1017 391 5.502762 21.51579942 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 276 2.0399999999999998e-69   NTclustered gi|49356809|gb|AY605213.1| 282480 g983 i0 86.561 44.2020460358056 253 30 64 3 60 311 656 905 Uncultured Lobosea clone Sey078 small subunit ribosomal RNA gene, partial sequence blastn 17283 276 1 Eukaryota Amoebozoa   Tubulinea         uncultured Lobosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;