RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB8827" and tax_phylum = "Peploviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Peploviricota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJEB8827 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
144886 144886 PRJEB8827_P_NODE_1201_length_213_cov_113.076087_g1179_i0 PRJEB8827 1201 213 113.076087 240.85206531 Lymphocryptovirus humangamma4 3050299 Viruses Viruses 56.5 0.001   NTclustered gi|1386449979|gb|MG298870.1| 10376 g1179 i0 100 0.140845070422535 30 0 14 0 184 213 167967 167938 Human gammaherpesvirus 4 isolate JC_V005, partial genome blastn 30 56.5 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
9072321 9072321 PRJEB8827_P_NODE_748_length_240_cov_882.090047_g726_i0 PRJEB8827 748 240 882.090047 2117.0161128 Lymphocryptovirus humangamma4 3050299 Viruses Viruses 58.4 4.64e-4   NTclustered gi|1386449979|gb|MG298870.1| 10376 g726 i0 97.143 0.145833333333333 35 0 14 1 207 240 167966 167932 Human gammaherpesvirus 4 isolate JC_V005, partial genome blastn 35 58.4 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
25530405 25530405 PRJEB8827j_S_NODE_153_length_341_cov_567.823529_g149_i0 PRJEB8827 153 341 567.823529 1936.27823389 human gammaherpesvirus 4 10376 Viruses Viruses 104 8.77e-18   NTclustered gi|1386449979|gb|MG298870.1| 10376 g149 i0 96.825 18.7038123167155 63 0 18 2 280 341 36638 36577 Human gammaherpesvirus 4 isolate JC_V005, partial genome blastn 6378 104 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
26074105 26074105 PRJEB8827e_S_NODE_9069_length_195_cov_297.218750_g9041_i0 PRJEB8827 9069 195 297.21875 579.5765625 human gammaherpesvirus 4 10376 Viruses Viruses 52.8 0.017   NTclustered gi|1386449979|gb|MG298870.1| 10376 g9041 i0 100 0.143589743589744 28 0 14 0 134 161 36318 36345 Human gammaherpesvirus 4 isolate JC_V005, partial genome blastn 28 52.8 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
26210055 26210055 PRJEB8827b_S_NODE_1870_length_245_cov_13.666667_g1818_i0 PRJEB8827 1870 245 13.666667 33.48333415 human gammaherpesvirus 4 10376 Viruses Viruses 97.1 1.01e-15   NTclustered gi|330330|gb|M80517.1|HS4B958RAJ 10376 g1818 i0 100 21.2408163265306 52 0 21 0 172 223 147243 147192 Epstein-Barr virus, artifactual joining of B95-8 complete genome and the sequences from Raji of the large deletion found in B95-8 blastn 5204 97.1 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
26210884 26210884 PRJEB8827h_S_NODE_2446_length_222_cov_44816.459893_g2427_i0 PRJEB8827 2446 222 44816.459893 99492.54096246 human gammaherpesvirus 4 10376 Viruses Viruses 132 2.46e-26   NTclustered gi|1386449979|gb|MG298870.1| 10376 g2427 i0 98.649 40.9234234234234 74 1 33 0 128 201 36634 36561 Human gammaherpesvirus 4 isolate JC_V005, partial genome blastn 9085 132 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
26482939 26482939 PRJEB8827h_S_NODE_1512_length_254_cov_2964.091324_g1493_i0 PRJEB8827 1512 254 2964.091324 7528.79196296 human gammaherpesvirus 4 10376 Viruses Viruses 52.8 0.023   NTclustered gi|1386449979|gb|MG298870.1| 10376 g1493 i0 100 0.110236220472441 28 0 11 0 208 235 167960 167933 Human gammaherpesvirus 4 isolate JC_V005, partial genome blastn 28 52.8 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;