RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB8827" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB8827 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25665462 25665462 PRJEB8827b_S_NODE_38194_length_162_cov_1.181102_g38142_i0 PRJEB8827 38194 162 1.181102 1.91338524 Spizellomyces punctatus DAOM BR117 645134 Fungi Fungi 115 1.7e-21   NTclustered gi|1026990807|ref|XM_016753365.1| 645134 g38142 i0 94.595 38.7469135802469 74 4 46 0 89 162 1478 1405 Spizellomyces punctatus DAOM BR117 tubulin alpha chain (SPPG_05136), mRNA blastn 6277 115 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
26026120 26026120 PRJEB8827h_S_NODE_508_length_366_cov_3.691843_g489_i0 PRJEB8827 508 366 3.691843 13.51214538 Staurastromyces 2006669 Fungi Fungi 102 3.4e-17   NTclustered gi|2465121858|gb|OQ687259.1| 687209 g489 i0 81.203 37.4234972677596 133 20 36 4 236 366 405 534 Uncultured Rhizophydiales isolate UMPB-1297 small subunit ribosomal RNA gene, partial sequence blastn 13697 102 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     uncultured Rhizophydiales
26210536 26210536 PRJEB8827f_S_NODE_2878_length_256_cov_2.927602_g2858_i0 PRJEB8827 2878 256 2.927602 7.49466112 Polychytrium aggregatum 110093 Fungi Fungi 246 9.95e-61   NTclustered gi|2432149348|ref|XM_053111166.1| 110093 g2858 i0 87.736 80.1484375 212 25 83 1 45 256 531 321 Polychytrium aggregatum ribosomal protein S19-domain-containing protein (BJ171DRAFT_506928), mRNA blastn 20518 246 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;